lm_summary: Model summary

In qzhang503/proteoQ: Processing and Informatic Analysis of Mass Spectrometrirc Data

Model summary

Description

Model summary

Usage

lm_summary(pvals, log2rs, pval_cutoff, logFC_cutoff, padj_method = "BH")

Arguments

pvals	A data frame of pVal
log2rs	A data frame of log2FC
pval_cutoff	Numeric; the cut-off in significance pVal. Entries with pVals smaller than the threshold will be excluded from multiple test corrections. The default is at 1 to include all entries.
logFC_cutoff	Numeric; the cut-off in log2FC. Entries with absolute log2FC smaller than the threshold will be removed from multiple test corrections. The default is at log2(1) to include all entries.
padj_method	Character string; the method of multiple-test corrections for uses with p.adjust. The default is "BH". See ?p.adjust.methods for additional choices.

qzhang503/proteoQ documentation built on March 16, 2024, 5:27 a.m.