load_dbs: Loads species-specific Databases

In qzhang503/proteoQ: Processing and Informatic Analysis of Mass Spectrometrirc Data

Loads species-specific Databases

Description

A function loads a set of precompiled gene sets of GO and molecular signatures.

Usage

load_dbs(gset_nms = NULL, species = NULL)

Arguments

gset_nms

Character string or vector containing the shorthanded name(s), full file path(s), or both, to gene sets for enrichment analysis. For species among "human", "mouse", "rat", the default of c("go_sets", "c2_msig", "kinsub") will utilize terms from gene ontology (GO), molecular signatures (MSig) and kinase-substrate network (PSP Kinase-Substrate). Custom GO, MSig and other data bases at given species are also supported. See also: prepGO for the preparation of custom GO; prepMSig for the preparation of custom MSig. For other custom data bases, follow the same format of list as GO or MSig.

species

Character string; the name of a species.

See Also

load_expts for supported species.

Examples

load_dbs("go_sets", "human")

qzhang503/proteoQ documentation built on Dec. 14, 2024, 12:27 p.m.