load_stringdbs: Loads species-specific databases of STRING

In qzhang503/proteoQ: Processing and Informatic Analysis of Mass Spectrometrirc Data

Loads species-specific databases of STRING

Description

A function loads a set of precompiled gene sets of GO and String.

Usage

load_stringdbs(db_nms = NULL)

Arguments

db_nms

Character string(s) to the name(s) of STRING database(s) with prepended directory path. The STRING database(s) need to match those generated from prepString. There is no default and users need to provide the correct file path(s) and name(s).

See Also

load_expts for supported species.

load_dbs for loading databases of GO and MSig.

Examples

prepString(human)
prepString(mouse)

load_stringdbs(
  db_nms = c("~/proteoQ/dbs/string/string_hs.rds",
             "~/proteoQ/dbs/string/string_mm.rds")
)

qzhang503/proteoQ documentation built on March 16, 2024, 5:27 a.m.