load_stringdbs: Loads species-specific databases of STRING
In qzhang503/proteoQ: Processing and Informatic Analysis of Mass Spectrometrirc Data
load_stringdbs R Documentation
Loads species-specific databases of STRING
Description
A function loads a set of precompiled gene sets of
GO
and
String.
Usage
load_stringdbs(db_nms = NULL)
Arguments
db_nms
Character string(s) to the name(s) of STRING database(s) with
prepended directory path. The STRING database(s) need to match those
generated from prepString. There is no default and users need
to provide the correct file path(s) and name(s).
See Also
load_expts for supported species.
load_dbs for loading databases of GO and
MSig.
Examples
prepString(human)
prepString(mouse)
load_stringdbs(
db_nms = c("~/proteoQ/dbs/string/string_hs.rds",
"~/proteoQ/dbs/string/string_mm.rds")
)
qzhang503/proteoQ documentation built on Dec. 14, 2024, 12:27 p.m.
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| load_stringdbs | R Documentation |
Loads species-specific databases of STRING
Description
A function loads a set of precompiled gene sets of GO and String.
Usage
load_stringdbs(db_nms = NULL)
Arguments
db_nms |
Character string(s) to the name(s) of STRING database(s) with
prepended directory path. The |
See Also
load_expts for supported species.
load_dbs for loading databases of GO and
MSig.
Examples
prepString(human)
prepString(mouse)
load_stringdbs(
db_nms = c("~/proteoQ/dbs/string/string_hs.rds",
"~/proteoQ/dbs/string/string_mm.rds")
)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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