make_cls: Make GSEA cls

In qzhang503/proteoQ: Processing and Informatic Analysis of Mass Spectrometrirc Data

Make GSEA cls

Description

Make GSEA cls

Usage

make_cls(df, nms, filepath, fn_prefix)

Arguments

df	The name of a primary data file. By default, it will be determined automatically after matching the types of data and analysis with an id among c("pep_seq", "pep_seq_mod", "prot_acc", "gene"). A primary file contains normalized peptide or protein data and is among c("Peptide.txt", "Peptide_pVal.txt", "Peptide_impNA_pVal.txt", "Protein.txt", "Protein_pVal.txt", "protein_impNA_pVal.txt"). For analyses require the fields of significance p-values, the df will be one of c("Peptide_pVal.txt", "Peptide_impNA_pVal.txt", "Protein_pVal.txt", "protein_impNA_pVal.txt").
nms	The names of sample groups.
filepath	A file path to output results. By default, it will be determined automatically by the name of the calling function and the value of id in the call.
fn_prefix	The base name of a file.

qzhang503/proteoQ documentation built on Dec. 14, 2024, 12:27 p.m.