make_frac_smry: Makes new frac_smry.xlsx.

In qzhang503/proteoQ: Processing and Informatic Analysis of Mass Spectrometrirc Data

Makes new frac_smry.xlsx.

Description

warning: data in a auto-generated frac_smry.xlsx currently may not fix itself if they were based on wrong information from expt_smry.xlsx. May need more thorough checking of frac_smry.xlsx upon any update or correction of expt_smry.xlsx

Usage

make_frac_smry(
  frac_smry = "frac_smry.xlsx",
  expt_smry = "expt_smry",
  dat_dir = NULL,
  label_scheme_full = NULL,
  tbl_mascot = NULL,
  is_tmt = TRUE
)

Arguments

frac_smry	A character string to a .xlsx file containing peptide fractionation summary. The default is frac_smry.xlsx.
expt_smry	A character string to a .xlsx file containing the metadata of TMT or LFQ experiments. The default is expt_smry.xlsx.
dat_dir	A character string to the working directory. The default is to match the value under the global environment.
label_scheme_full	The metadata of expt_smry.
tbl_mascot	A table of message for Mascot workflow.
is_tmt	Logical; is TMT experiments or not.

qzhang503/proteoQ documentation built on March 16, 2024, 5:27 a.m.