postMZpepLFQ: Post-processing of Mzion PSM tables.
In qzhang503/proteoQ: Processing and Informatic Analysis of Mass Spectrometrirc Data
postMZpepLFQ R Documentation
Post-processing of Mzion PSM tables.
Description
Post-processing of Mzion PSM tables.
Usage
postMZpepLFQ(df, group_pep_by = "gene", type_sd = "log2_R", set_idx = 1L)
Arguments
df
A data frame of peptide table.
group_pep_by
A character string specifying the method in peptide
grouping. At the prot_acc default, descriptive statistics will be
calculated based on the same prot_acc groups. At the gene
alternative, proteins with the same gene name but different accession
numbers will be treated as one group.
type_sd
Character string; the type of log2Ratios for SD calculations.
The value is one log2_R, N_log2_R or Z_log2_R.
set_idx
A set index of TMT experiment.
qzhang503/proteoQ documentation built on Feb. 27, 2025, 8:34 a.m.
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| postMZpepLFQ | R Documentation |
Post-processing of Mzion PSM tables.
Description
Post-processing of Mzion PSM tables.
Usage
postMZpepLFQ(df, group_pep_by = "gene", type_sd = "log2_R", set_idx = 1L)
Arguments
df |
A data frame of peptide table. |
group_pep_by |
A character string specifying the method in peptide
grouping. At the |
type_sd |
Character string; the type of log2Ratios for SD calculations.
The value is one |
set_idx |
A set index of TMT experiment. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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