proteoQ: proteoQ: A package for processing mass spectrometry data.
In qzhang503/proteoQ: Processing and Informatic Analysis of Mass Spectrometrirc Data
proteoQ R Documentation
proteoQ: A package for processing mass spectrometry data.
Description
The proteoQ provides four categories of functions in data preprocessing, (2)
annotation, (3) quality assurance assessments and (4) informatic analysis.
The companion package, mzion, performs database searches.
Utilities in data preprocessing
normPSM -> (purgePSM) -> PSM2Pep ->
mergePep -> standPep -> (purgePep) -> standPrn
Utilities in custom database preparation
prepGO, prepMSig,
prepString, Uni2Entrez, Ref2Entrez
Utilities in data QA and QC
pepHist, prnHist, pepCorr_logFC,
pepCorr_logInt, prnCorr_logFC, prnCorr_logInt,
Utilities in informatic analysis
pepMDS, prnMDS, pepPCA, prnPCA,
pepLDA, prnLDA, pepEucDist, prnEucDist, pepHM, prnHM, anal_pepNMF,
anal_prnNMF, plot_pepNMFCon, plot_prnNMFCon, plot_pepNMFCoef,
plot_prnNMFCoef, plot_metaNMF, anal_prnTrend, plot_prnTrend, pepSig,
prnSig, pepVol, prnVol, prnGSPA, prnGSPAHM, gspaMap, anal_prnString,
pepImp, prnImp, prnGSVA, prnGSEA, cluego
qzhang503/proteoQ documentation built on March 16, 2024, 5:27 a.m.
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| proteoQ | R Documentation |
proteoQ: A package for processing mass spectrometry data.
Description
The proteoQ provides four categories of functions in data preprocessing, (2) annotation, (3) quality assurance assessments and (4) informatic analysis. The companion package, mzion, performs database searches.
Utilities in data preprocessing
normPSM -> (purgePSM) -> PSM2Pep -> mergePep -> standPep -> (purgePep) -> standPrn
Utilities in custom database preparation
prepGO, prepMSig, prepString, Uni2Entrez, Ref2Entrez
Utilities in data QA and QC
pepHist, prnHist, pepCorr_logFC, pepCorr_logInt, prnCorr_logFC, prnCorr_logInt,
Utilities in informatic analysis
pepMDS, prnMDS, pepPCA, prnPCA, pepLDA, prnLDA, pepEucDist, prnEucDist, pepHM, prnHM, anal_pepNMF, anal_prnNMF, plot_pepNMFCon, plot_prnNMFCon, plot_pepNMFCoef, plot_prnNMFCoef, plot_metaNMF, anal_prnTrend, plot_prnTrend, pepSig, prnSig, pepVol, prnVol, prnGSPA, prnGSPAHM, gspaMap, anal_prnString, pepImp, prnImp, prnGSVA, prnGSEA, cluego
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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