rm_RToutliers: Cross-file removals of retention outliers

In qzhang503/proteoQ: Processing and Informatic Analysis of Mass Spectrometrirc Data

Cross-file removals of retention outliers

Description

Nullify X, Y, T(ime) and S(can) values if found as RT outliers (> 95 quantile of SD).

Usage

rm_RToutliers(
  pep_seq_modzs = NULL,
  pep_exp_mzs = NULL,
  pep_exp_ints = NULL,
  pep_apex_rets = NULL,
  pep_apex_scans = NULL,
  mx = NULL,
  my = NULL,
  mt = NULL,
  ms = NULL,
  qt = 0.95,
  ok_unv = FALSE
)

Arguments

pep_seq_modzs	List of peptide sequences with modifications and charge states.
pep_exp_mzs	List of m-over-z values. Each list element corresponds to entries in a df.
pep_exp_ints	List of intensity values.
pep_apex_rets	List of retention time values.
pep_apex_scans	List of apex scan numbers.
qt	The quantile for considering retention-time outliers.
ok_unv	Logical; is the universe ready or need to be compiled.

qzhang503/proteoQ documentation built on Dec. 14, 2024, 12:27 p.m.