rm_apexrt_outliers: Remove PSM retention outliers
In qzhang503/proteoQ: Processing and Informatic Analysis of Mass Spectrometrirc Data
rm_apexrt_outliers R Documentation
Remove PSM retention outliers
Description
Nullify the apexes with large distance between pep_ret_range and
pep_apex_ret. Also remove the entries of very low intensity entries
(in multi-PSM groups of pep_seq_mod).
Usage
rm_apexrt_outliers(df = NULL, key = "pep_seq_mod", rt_tol = 240, y_tol = 0.01)
Arguments
df
A PSM table at a TMTset[i]LCMSinj[j].
key
A column key for data grouping.
rt_tol
Tolerance in retention times between pep_ret_range and
pep_apex_ret in seconds.
y_tol
Tolerance in intensity in relative to the based apex intensity.
qzhang503/proteoQ documentation built on Feb. 27, 2025, 8:34 a.m.
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| rm_apexrt_outliers | R Documentation |
Remove PSM retention outliers
Description
Nullify the apexes with large distance between pep_ret_range and
pep_apex_ret. Also remove the entries of very low intensity entries
(in multi-PSM groups of pep_seq_mod).
Usage
rm_apexrt_outliers(df = NULL, key = "pep_seq_mod", rt_tol = 240, y_tol = 0.01)
Arguments
df |
A PSM table at a TMTset[i]LCMSinj[j]. |
key |
A column key for data grouping. |
rt_tol |
Tolerance in retention times between |
y_tol |
Tolerance in intensity in relative to the based apex intensity. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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