rm_apexrt_outliers: Remove PSM retention outliers
In qzhang503/proteoQ: Processing and Informatic Analysis of Mass Spectrometrirc Data
rm_apexrt_outliers R Documentation
Remove PSM retention outliers
Description
By the distance between pep_ret_range and pep_apex_ret. Also
remove very low intensity entries.
Usage
rm_apexrt_outliers(df = NULL, rt_tol = 120, y_tol = 0.01)
Arguments
df
A PSM table at a TMTset[i]LCMSinj[j].
rt_tol
Tolerance in retention times between pep_ret_range and
pep_apex_ret in seconds.
y_tol
Tolerance in intensity in relative to the based apex intensity.
qzhang503/proteoQ documentation built on Dec. 14, 2024, 12:27 p.m.
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| rm_apexrt_outliers | R Documentation |
Remove PSM retention outliers
Description
By the distance between pep_ret_range and pep_apex_ret. Also
remove very low intensity entries.
Usage
rm_apexrt_outliers(df = NULL, rt_tol = 120, y_tol = 0.01)
Arguments
df |
A PSM table at a TMTset[i]LCMSinj[j]. |
rt_tol |
Tolerance in retention times between |
y_tol |
Tolerance in intensity in relative to the based apex intensity. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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