rptr_violin: Violin plots of reporter-ion intensity per TMT_Set and...

In qzhang503/proteoQ: Processing and Informatic Analysis of Mass Spectrometrirc Data

Violin plots of reporter-ion intensity per TMT_Set and LCMS_injection

Description

Violin plots of reporter-ion intensity per TMT_Set and LCMS_injection

Usage

rptr_violin(df, filepath, width, height)

Arguments

df	The name of a primary data file. By default, it will be determined automatically after matching the types of data and analysis with an id among c("pep_seq", "pep_seq_mod", "prot_acc", "gene"). A primary file contains normalized peptide or protein data and is among c("Peptide.txt", "Peptide_pVal.txt", "Peptide_impNA_pVal.txt", "Protein.txt", "Protein_pVal.txt", "protein_impNA_pVal.txt"). For analyses require the fields of significance p-values, the df will be one of c("Peptide_pVal.txt", "Peptide_impNA_pVal.txt", "Protein_pVal.txt", "protein_impNA_pVal.txt").
filepath	A file path to output results. By default, it will be determined automatically by the name of the calling function and the value of id in the call.
width	The width of a plot.
height	The height of a plot.

qzhang503/proteoQ documentation built on April 13, 2025, 8:31 a.m.