set_db_outname: Helper to set the output file name for a data base

In qzhang503/proteoQ: Processing and Informatic Analysis of Mass Spectrometrirc Data

Helper to set the output file name for a data base

Description

Helper to set the output file name for a data base

Usage

set_db_outname(filename = NULL, species = "human", signature)

Arguments

filename	Character string; An output file name. At the NULL default, the name will be determined automatically at a given species; i.e., msig_hs.rds for human data. The file is saved as a .rds object for uses with prnGSPA.
species	Character string; the name of a species for the conveninent preparation of MSig data bases. The species available for the convenience feature is in one of c("human", "mouse", "rat") with "human" being the default. The argument is not required for other species; instead, users will provide values under arguments ortho_mart for the lookup of orthologs to human.
signature	A character string, i.e. "go" for uses in an output filename.

qzhang503/proteoQ documentation built on March 16, 2024, 5:27 a.m.