use_mf_peptable: Check the single presence of MSFragger peptide table

use_mf_peptableR Documentation

Check the single presence of MSFragger peptide table

Description

Check the single presence of MSFragger peptide table

Usage

use_mf_peptable(dat_dir, label_scheme_full, group_psm_by = "pep_seq_mod")

Arguments

dat_dir

The working directory.

label_scheme_full

The metadata

group_psm_by

A character string specifying the method in PSM grouping. At the pep_seq default, descriptive statistics will be calculated based on the same pep_seq groups. At the pep_seq_mod alternative, peptides with different variable modifications will be treated as different species and descriptive statistics will be calculated based on the same pep_seq_mod groups.


qzhang503/proteoQ documentation built on Dec. 14, 2024, 12:27 p.m.