process_msomStatic: Process Output from msomStatic (annual)

In rBatt/trawlDiversity: Long-term changes in species richness along the North American coastline

Description

Processes a list structured as run_msom output (level 2) within a year (level 1) to be used to summarize diversity. Note that this function then only processes 1 region at a time, so it expects a list whose length is equal to the number of years for a region. Currently, intended to work with Stan model.

Usage

process_msomStatic(reg_out, save_mem = TRUE, obs_yrs)

Arguments

reg_out	A list with length equal to number of years in a region, with each element containing output from run_msom
save_mem	Save memory be deleting intermediate steps as function progresses; default TRUE (only reason for FALSE is for debugging)
obs_yrs	Optional vector of integers of calendar years used to process richness from observed data; used to subset years of MSOM analysis

Details

Right now only intended for use with specific structuring of the output, so that it matches the output expected from running each year separately using the Stan version of the msomStatic model.

rBatt/trawlDiversity documentation built on Aug. 14, 2021, 1:01 p.m.