Description Usage Format Details See Also
Master data set for community level metrics related to beta diversity, species richness, environmental values, and cross-species averages of MSOM parameters
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data.table
Many of the columns in this data set are cross-species averages of columns by the same (or similar) name in spp_master
.
reg | character | region name |
year | integer | year |
method | character | method for standardization for beta diversity calculation (see beta_div_quick ) |
beta_div_mu | numeric | for each posterior iteration from MSOM Z, beta diversity is calculated; this is the average of those posterior calculations |
beta_div_sd | numeric | standard deviation of posterior beta diversity |
Omega | numeric | posterior average of the MSOM Omega parameter |
reg_rich | numeric | posterior average of MSOM richness estimate |
n_col | integer | number of observed colonizers this year (see get_colonizers ) |
n_ext | integer | number of species that were observed this year, but will not be observed next year (see get_colonizers ) |
n_pers | integer | number of species present this year that are also present in adjacent sampling years (i.e., = richness - (n_col+n_ext)) (see get_colonizers ) |
bt_ann | numeric | cross-stratum average bottom temperature for current year (same as in spp_master ) |
naive_rich | numeric | observed species richness |
bt_opt_avg, bt_tol_avg, detect_mu_avg, detect_mu | numeric | cross-species average of column by same name in spp_master |
propStrata_avg | numeric | cross species average of propStrata in spp_master |
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