beta_div_quick | Calculate Beta Diversity Quickly |
bt_metrics | Bottom Temperature Metrics |
comm_master | Master Community-Level Data |
data_all | Data from All Regions |
event_distance | Event Distance |
event_stretches | Find and Classify Unbroken Stretches of an Event |
format_range | Format data to calculate range Reformat data for use in... |
get_ab | Get Alpha and Beta |
get_colonizers | Get Colonizations and Extinctions |
getCovType | Get Covariate Type |
get_data_all | Get Data from All Regions |
get_iters | Get sampled iterations of posterior |
get_show_up_spp | Get species that show up and remain |
ifInd_strip_noInd | Strip the not-indexed equivalents of the elements whose names... |
localAC | Results for local autocorrelation |
local_rich_sample | Resample Observed Local Richness |
make_mapDat | Make data for maps related to diversity analysis |
make_owin | Make owin from Region Outline |
mapDat | Data for Maps |
mapOwin | Region outlines in owin format |
mk_cov_rv | Make Covariate (and their powers) a RV |
msomData | msomData |
msom_params | Print Names of MSOM Parameters |
mytrace | Posterior Traceplots |
outlines | Regional Polygon Outlines |
plot_ab | Plot Alpha and Beta |
plot_btemp_map | Plot Map of Bottom Temperature |
plot_ce | Plot a Species that Colonizes and/or goes Extinct |
plot_ce_wrap | Colonization and Extinction Plotting Wrapper |
plot_colExt_perStrat | Number of Colonizations and Extinctions in Each Stratum |
plot_col_vs_unobsSpp | Plot colonizers and unobserved species |
plot_device | Plot Device |
plot_post_corr | Plot Posterior Correlation |
plot_rank_temp | Plot the Temperature Rank of Colonizers and Leavers |
plot_rich_bt_scatter | Scatter Plot of Richness and Bottom Temperature |
plot_rich_bt_ts | Plot Richness and Bottom Temperature Time Series |
plot_space | Plot Spatial Data |
plot_traceplot | Plot a Traceplot for MSOM Hyperparameters |
post_trend | Trend through Posterior Distributions |
process_msomStatic | Process Output from msomStatic (annual) |
process_obsRich | Process Observed Data for Richness |
prop_sd_pow | Propagate standard deviation from raising to power |
range_sample | Resample the observed range of species occurrences |
rank_temp | Rank Species by Temperature |
response_metrics | Response Metrics for Quadratic Model |
run_msom | Run an MSOM Model |
run_sac | Run Species Accumulation Curve Estimate of Richness |
seqAgg | Sequential Aggregation |
show_up_spp | Species that have shown up late, and stayed around |
spatial_ac | Compute Local Spatial Autocorrelation |
spp_master | Master Species-Level Data |
streak_length | Streak Length |
timeSlope | Time Slope |
trawlDiversity | trawlDiversity: A package for calculating species richness... |
trawl_layout | Trawl Layout |
trim_msom | Trim trawl data for msom |
tsTau | Kendall's Tau with Serial Dependence |
unpack_p | Unpack P |
unscale | Unscale Parameters |
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