Man pages for rBatt/trawlDiversity
Long-term changes in species richness along the North American coastline
| beta_div_quick | Calculate Beta Diversity Quickly |
| bt_metrics | Bottom Temperature Metrics |
| comm_master | Master Community-Level Data |
| data_all | Data from All Regions |
| event_distance | Event Distance |
| event_stretches | Find and Classify Unbroken Stretches of an Event |
| format_range | Format data to calculate range Reformat data for use in... |
| get_ab | Get Alpha and Beta |
| get_colonizers | Get Colonizations and Extinctions |
| getCovType | Get Covariate Type |
| get_data_all | Get Data from All Regions |
| get_iters | Get sampled iterations of posterior |
| get_show_up_spp | Get species that show up and remain |
| ifInd_strip_noInd | Strip the not-indexed equivalents of the elements whose names... |
| localAC | Results for local autocorrelation |
| local_rich_sample | Resample Observed Local Richness |
| make_mapDat | Make data for maps related to diversity analysis |
| make_owin | Make owin from Region Outline |
| mapDat | Data for Maps |
| mapOwin | Region outlines in owin format |
| mk_cov_rv | Make Covariate (and their powers) a RV |
| msomData | msomData |
| msom_params | Print Names of MSOM Parameters |
| mytrace | Posterior Traceplots |
| outlines | Regional Polygon Outlines |
| plot_ab | Plot Alpha and Beta |
| plot_btemp_map | Plot Map of Bottom Temperature |
| plot_ce | Plot a Species that Colonizes and/or goes Extinct |
| plot_ce_wrap | Colonization and Extinction Plotting Wrapper |
| plot_colExt_perStrat | Number of Colonizations and Extinctions in Each Stratum |
| plot_col_vs_unobsSpp | Plot colonizers and unobserved species |
| plot_device | Plot Device |
| plot_post_corr | Plot Posterior Correlation |
| plot_rank_temp | Plot the Temperature Rank of Colonizers and Leavers |
| plot_rich_bt_scatter | Scatter Plot of Richness and Bottom Temperature |
| plot_rich_bt_ts | Plot Richness and Bottom Temperature Time Series |
| plot_space | Plot Spatial Data |
| plot_traceplot | Plot a Traceplot for MSOM Hyperparameters |
| post_trend | Trend through Posterior Distributions |
| process_msomStatic | Process Output from msomStatic (annual) |
| process_obsRich | Process Observed Data for Richness |
| prop_sd_pow | Propagate standard deviation from raising to power |
| range_sample | Resample the observed range of species occurrences |
| rank_temp | Rank Species by Temperature |
| response_metrics | Response Metrics for Quadratic Model |
| run_msom | Run an MSOM Model |
| run_sac | Run Species Accumulation Curve Estimate of Richness |
| seqAgg | Sequential Aggregation |
| show_up_spp | Species that have shown up late, and stayed around |
| spatial_ac | Compute Local Spatial Autocorrelation |
| spp_master | Master Species-Level Data |
| streak_length | Streak Length |
| timeSlope | Time Slope |
| trawlDiversity | trawlDiversity: A package for calculating species richness... |
| trawl_layout | Trawl Layout |
| trim_msom | Trim trawl data for msom |
| tsTau | Kendall's Tau with Serial Dependence |
| unpack_p | Unpack P |
| unscale | Unscale Parameters |
