Files in rBatt/trawlDiversity
Long-term changes in species richness along the North American coastline

.Rbuildignore

.gitattributes

.gitignore

DESCRIPTION

LICENSE

NAMESPACE

R/beta_div_quick.R R/bt_metrics.R R/datasets.R R/declareColumns.R R/event_distance.R R/event_stretches.R R/getCovType.R R/get_ab.R R/get_colonizers.R R/get_data_all.R R/get_iters.R R/get_show_up_spp.R R/helperMisc.R R/local_rich_sample.R R/make_mapDat.R R/make_owin.R R/mk_cov_rv.R R/msomData.R R/msom_params.R R/my_trace.R R/package-trawlDiversity.R R/plot_ab.R R/plot_btemp_map.R R/plot_ce.R R/plot_ce_wrap.R R/plot_colExt_perStrat.R R/plot_col_vs_unobsSpp.R R/plot_device.R R/plot_post_corr.R R/plot_rank_temp.R R/plot_rich_bt_scatter.R R/plot_rich_bt_ts.R R/plot_space.R R/plot_traceplot.R R/process_msomStatic.R R/process_obsRich.R R/range_sample.R R/rank_temp.R R/response_metrics.R R/run_msom.R R/run_sac.R R/seqAgg.R R/spatial_ac.R R/streak_length.R R/timeSlope.R R/trawl_layout.R R/trim_msom.R R/tsTau.R R/unpack_p.R R/unscale.R README.md

data/comm_master.RData

data/data_all.RData

data/localAC.RData

data/mapDat.RData

data/mapOwin.RData

data/outlines.RData

data/show_up_spp.RData

data/spp_master.RData

inst/jags/msomDynamic.jags

inst/jags/msomStatic.jags

inst/jags/msomStatic_norv.jags

inst/jags/msomStatic_norv_1yr.jags

inst/stan/msomDynamic.stan

inst/stan/msomStatic.stan

inst/stan/msomStatic_norv.stan

inst/stan/msomStatic_norv_1yr.stan

man/beta_div_quick.Rd man/bt_metrics.Rd man/comm_master.Rd man/data_all.Rd man/event_distance.Rd man/event_stretches.Rd man/format_range.Rd man/getCovType.Rd man/get_ab.Rd man/get_colonizers.Rd man/get_data_all.Rd man/get_iters.Rd man/get_show_up_spp.Rd man/ifInd_strip_noInd.Rd man/localAC.Rd man/local_rich_sample.Rd man/make_mapDat.Rd man/make_owin.Rd man/mapDat.Rd man/mapOwin.Rd man/mk_cov_rv.Rd man/msomData.Rd man/msom_params.Rd man/mytrace.Rd man/outlines.Rd man/plot_ab.Rd man/plot_btemp_map.Rd man/plot_ce.Rd man/plot_ce_wrap.Rd man/plot_colExt_perStrat.Rd man/plot_col_vs_unobsSpp.Rd man/plot_device.Rd man/plot_post_corr.Rd man/plot_rank_temp.Rd man/plot_rich_bt_scatter.Rd man/plot_rich_bt_ts.Rd man/plot_space.Rd man/plot_traceplot.Rd man/post_trend.Rd man/process_msomStatic.Rd man/process_obsRich.Rd man/prop_sd_pow.Rd man/range_sample.Rd man/rank_temp.Rd man/response_metrics.Rd man/run_msom.Rd man/run_sac.Rd man/seqAgg.Rd man/show_up_spp.Rd man/spatial_ac.Rd man/spp_master.Rd man/streak_length.Rd man/timeSlope.Rd man/trawlDiversity.Rd man/trawl_layout.Rd man/trim_msom.Rd man/tsTau.Rd man/unpack_p.Rd man/unscale.Rd pkgBuild/beta_div.R pkgBuild/beta_range.R pkgBuild/dependencies.R pkgBuild/ebs_conf_beta.R

pkgBuild/figures/Figures.RData

pkgBuild/manuscript/manuscript_binSize.RData

pkgBuild/manuscript/manuscript_data.R pkgBuild/manuscript/manuscript_data_functions.R pkgBuild/manuscript/manuscript_figures.R pkgBuild/manuscript/manuscript_figures_functions.R pkgBuild/manuscript/manuscript_results.R

pkgBuild/manuscript/manuscript_results.html

pkgBuild/manuscript/manuscript_results.pdf pkgBuild/manuscript/manuscript_stats.R pkgBuild/manuscript/manuscript_stats_functions.R pkgBuild/manuscript/manuscript_stats_richTrend.R pkgBuild/msomDynamic.R pkgBuild/msomStatic.R pkgBuild/rebuild_script.R

pkgBuild/results/msomStatic_norv_1yr_ai_jags_12kIter_50nZ_start2016-05-07_r2.RData

pkgBuild/results/msomStatic_norv_1yr_ebs_jags_12kIter_50nZ_start2016-05-07_r1.RData

pkgBuild/results/msomStatic_norv_1yr_gmex_jags_12kIter_50nZ_start2016-05-07_r6.RData

pkgBuild/results/msomStatic_norv_1yr_goa_jags_12kIter_50nZ_start2016-05-07_r3.RData

pkgBuild/results/msomStatic_norv_1yr_neus_jags_12kIter_50nZ_start2016-05-07_r8.RData

pkgBuild/results/msomStatic_norv_1yr_newf_jags_12kIter_50nZ_start2016-05-07_r10.RData

pkgBuild/results/msomStatic_norv_1yr_sa_jags_12kIter_50nZ_start2016-05-07_r7.RData

pkgBuild/results/msomStatic_norv_1yr_shelf_jags_12kIter_50nZ_start2016-05-07_r9.RData

pkgBuild/results/msomStatic_norv_1yr_wcann_jags_12kIter_50nZ_start2016-05-07_r5.RData

pkgBuild/results/msomStatic_norv_1yr_wctri_jags_12kIter_50nZ_start2016-05-07_r4.RData

pkgBuild/results/processedMsom/p.RData

pkgBuild/results/resp_metrics.RData

pkgBuild/results/rich_naive_trend_kendall.RData

pkgBuild/results/rich_trend_kendall.RData

pkgBuild/spp_check/ai_colonizers_check.csv

pkgBuild/spp_check/ai_full_col_or_ext_check.csv

pkgBuild/spp_check/ai_full_colonizers_check.csv

pkgBuild/spp_check/col_only.RData

pkgBuild/spp_check/colonize_refs.RData

pkgBuild/spp_check/ebs_colonizers_check.csv

pkgBuild/spp_check/ebs_full_col_or_ext_check.csv

pkgBuild/spp_check/ebs_full_colonizers_check.csv

pkgBuild/spp_check/gmex_colonizers_check.csv

pkgBuild/spp_check/gmex_full_col_or_ext_check.csv

pkgBuild/spp_check/gmex_full_colonizers_check.csv

pkgBuild/spp_check/goa_colonizers_check.csv

pkgBuild/spp_check/goa_full_col_or_ext_check.csv

pkgBuild/spp_check/goa_full_colonizers_check.csv

pkgBuild/spp_check/man_remove.RData

pkgBuild/spp_check/neus_colonizers_check.csv

pkgBuild/spp_check/neus_full_col_or_ext_check.csv

pkgBuild/spp_check/neus_full_colonizers_check.csv

pkgBuild/spp_check/newf_colonizers_check.csv

pkgBuild/spp_check/newf_full_col_or_ext_check.csv

pkgBuild/spp_check/newf_full_colonizers_check.csv

pkgBuild/spp_check/sa_full_col_or_ext_check.csv

pkgBuild/spp_check/shelf_colonizers_check.csv

pkgBuild/spp_check/shelf_full_col_or_ext_check.csv

pkgBuild/spp_check/shelf_full_colonizers_check.csv

pkgBuild/spp_check/wcann_colonizers_check.csv

pkgBuild/spp_check/wcann_full_col_or_ext_check.csv

pkgBuild/spp_check/wcann_full_colonizers_check.csv

pkgBuild/spp_check/wctri_colonizers_check.csv

pkgBuild/spp_check/wctri_full_col_or_ext_check.csv

pkgBuild/spp_check/wctri_full_colonizers_check.csv

pkgBuild/spp_check_guesses.R pkgBuild/temporary_rebuild_figures_process.R pkgBuild/test/MAR_VAR.R pkgBuild/test/MAR_VAR.pdf

pkgBuild/test/VAR_p.stan

pkgBuild/test/VAR_p_cov.stan

pkgBuild/test/assess_msomDynamic.R pkgBuild/test/assess_msomStatic.R pkgBuild/test/colonizers_to_dataProviders.R pkgBuild/test/manuscript_figures_test.R pkgBuild/test/minimal_msomStatic.R pkgBuild/test/msom_source_script.R pkgBuild/test/msom_update.R pkgBuild/test/os2016.R pkgBuild/test/process_msom_figures.R pkgBuild/test/process_msom_script.R pkgBuild/test/test_boot_slope.R

submitted_pdfs/final/Batt_etal_RichnessRangeTrends_EcologyLetters_v3.0_MainText.docx

submitted_pdfs/final/Fig1.pdf submitted_pdfs/final/Fig2.pdf submitted_pdfs/final/Fig3.pdf submitted_pdfs/final/Fig4.pdf

rBatt/trawlDiversity documentation built on Aug. 14, 2021, 1:01 p.m.

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rBatt/trawlDiversity
Long-term changes in species richness along the North American coastline

Files in rBatt/trawlDiversity
Long-term changes in species richness along the North American coastline

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rBatt/trawlDiversity Long-term changes in species richness along the North American coastline

Files in rBatt/trawlDiversity Long-term changes in species richness along the North American coastline

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rBatt/trawlDiversity
Long-term changes in species richness along the North American coastline

Files in rBatt/trawlDiversity
Long-term changes in species richness along the North American coastline