tests/testthat/_snaps/estimate_pdiff_ind_contrast.md

In rcalinjageman/esci: Estimation Statistics with Confidence Intervals

Compare estimate_pdiff_ind_contrast to ESCI_Two_proportions example

Code
  estimate
Output
  Analysis of raw data:
  Outcome variable(s) = My outcome variable
  Grouping variable(s) = My grouping variable

  ---Overview---
    grouping_variable_name grouping_variable_level outcome_variable_name
  1   My grouping variable                Original   My outcome variable
  2   My grouping variable                Original   My outcome variable
  3   My grouping variable             Replication   My outcome variable
  4   My grouping variable             Replication   My outcome variable
    outcome_variable_level cases   n         P      P_LL      P_UL       P_SE
  1             egocentric    78 252 0.3095238 0.2557208 0.3692792 0.02896953
  2         Not egocentric   174 252 0.6904762 0.6307208 0.7442792 0.02896953
  3             egocentric    10  20 0.5000000 0.2999620 0.7000380 0.10206207
  4         Not egocentric    10  20 0.5000000 0.2999620 0.7000380 0.10206207
    P_adjusted     ta_LL     ta_UL
  1     0.3125 0.2648494 0.3601506
  2     0.6875 0.6398494 0.7351506
  3     0.5000 0.3321228 0.6678772
  4     0.5000 0.3321228 0.6678772

  -- es_proportion_difference --
          type outcome_variable_name   case_label grouping_variable_name
  1 Comparison   My outcome variable P_egocentric   My grouping variable
  2  Reference   My outcome variable P_egocentric   My grouping variable
  3 Difference   My outcome variable P_egocentric   My grouping variable
                    effect effect_size          LL        UL         SE
  1            Replication   0.5000000  0.29996201 0.7000380 0.10206207
  2               Original   0.3095238  0.25572077 0.3692792 0.02896953
  3 Replication ‒ Original   0.1904762 -0.02757339 0.4055261 0.11048660
    effect_size_adjusted       ta_LL     ta_UL
  1            0.5000000 0.332122830 0.6678772
  2            0.3125000 0.264849371 0.3601506
  3            0.1889764 0.007242087 0.3707107

  -- es_odds_ratio --
    outcome_variable_name   case_label grouping_variable_name
  1   My outcome variable P_egocentric   My grouping variable
                    effect effect_size        SE        LL       UL     ta_LL
  1 Replication / Original   0.4498567 0.2056321 0.1836475 1.101954 0.2120998
        ta_UL
  1 0.9541313

  -- es_phi --
    grouping_variable_name outcome_variable_name
  1   My grouping variable   My outcome variable
                                          effect effect_size         SE
  1 My grouping variable and My outcome variable   0.1062688 0.06521775
             LL        UL
  1 -0.02260905 0.2316724


  Note: LL and UL are lower and upper boundaries of confidence intervals with 95% expected coverage.

Test different estimate_pdiff_ind_contrast calls

Code
  estimate
Output
  Analysis of raw data:
  Outcome variable(s) = My outcome variable
  Grouping variable(s) = My grouping variable

  ---Overview---
    grouping_variable_name grouping_variable_level outcome_variable_name
  1   My grouping variable                 Control   My outcome variable
  2   My grouping variable                 Control   My outcome variable
  3   My grouping variable                    Drug   My outcome variable
  4   My grouping variable                    Drug   My outcome variable
  5   My grouping variable                 Therapy   My outcome variable
  6   My grouping variable                 Therapy   My outcome variable
    outcome_variable_level cases  n   P      P_LL      P_UL       P_SE P_adjusted
  1              Depressed    10 50 0.2 0.1113372 0.3331072 0.05657501  0.2222222
  2          Not Depressed    40 50 0.8 0.6668928 0.8886628 0.05657501  0.7777778
  3              Depressed    20 50 0.4 0.2763554 0.5384594 0.06686451  0.4074074
  4          Not Depressed    30 50 0.6 0.4615406 0.7236446 0.06686451  0.5925926
  5              Depressed    30 50 0.6 0.4615406 0.7236446 0.06686451  0.5925926
  6          Not Depressed    20 50 0.4 0.2763554 0.5384594 0.06686451  0.4074074
        ta_LL     ta_UL
  1 0.1291646 0.3152798
  2 0.6847202 0.8708354
  3 0.2974251 0.5173897
  4 0.4826103 0.7025749
  5 0.4826103 0.7025749
  6 0.2974251 0.5173897

  -- es_proportion_difference --
          type outcome_variable_name  case_label grouping_variable_name
  1 Comparison   My outcome variable P_Depressed   My grouping variable
  2  Reference   My outcome variable P_Depressed   My grouping variable
  3 Difference   My outcome variable P_Depressed   My grouping variable
                          effect effect_size        LL        UL         SE
  1           (Drug and Therapy)         0.5 0.4056985 0.5943015 0.04811389
  2                      Control         0.2 0.1113372 0.3331072 0.05657501
  3 (Drug and Therapy) ‒ Control         0.3 0.1462012 0.4382144 0.07449453
    effect_size_adjusted     ta_LL     ta_UL
  1            0.5000000 0.4208597 0.5791403
  2            0.2222222 0.1291646 0.3152798
  3            0.2922078 0.1696752 0.4147404

  -- es_odds_ratio --
    outcome_variable_name  case_label grouping_variable_name
  1   My outcome variable P_Depressed   My grouping variable
                          effect effect_size        SE        LL        UL
  1 (Drug and Therapy) / Control   0.3857272 0.1731468 0.1600256 0.9297603
      ta_LL     ta_UL
  1 0.18434 0.8071252


  Note: LL and UL are lower and upper boundaries of confidence intervals with 95% expected coverage.

rcalinjageman/esci documentation built on Dec. 23, 2024, 2:37 p.m.