annotations: example_annotations data

In rcavalcante/annotatr: Annotation of Genomic Regions to Genomic Annotations

example_annotations data

Description

A GRanges of precomputed annotations for CpG features. Created by doing build_annotations(genome='hg19', annotations = 'hg19_cpgs').

Usage

annotations

Format

A GRanges object with the CpG feature annotations for hg19 and containing mcols:

id

The internal ID for the annotation

tx_id

All NA, since these are not associated with tx_ids

gene_id

All NA, since there are not associated Entrez IDs

symbols

All NA, since there are not associated gene symbols

type

A character indicating the type of annotation. Including: 'hg19_cpg_islands', 'hg19_cpg_shores', 'hg19_cpg_shelves', and 'hg19_cpg_inter'.

Source

The AnnotationHub resource for hg19 CpG features.

rcavalcante/annotatr documentation built on Aug. 22, 2024, 7:33 a.m.