TxDb.* group of packages, construct genic annotations consisting of any combination of 1-5kb upstream of a TSS, promoters (< 1kb from TSS), 5UTRs, CDS, exons, first exons, introns, intron/exon and exon/intron boundaries, 3UTRs, and intergenic.
The genome assembly.
A character vector with entries of the form
A list of
GRanges objects with unique
id of the form
tx_id being the UCSC knownGene transcript name,
gene_id being the Entrez Gene ID,
symbol being the gene symbol from the Entrez ID to symbol mapping in
org.db for that species, and
type being the annotation type.
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