GRanges object consisting of all the desired
annotations. Supported annotation codes are listed by
builtin_annotations(). The basis for enhancer annotations are FANTOM5 data, the basis for CpG related annotations are CpG island tracks from
AnnotationHub, and the basis for genic annotations are from the
org.db group of packages.
The genome assembly.
A character vector of annotations to build. Valid annotation codes are listed with
GRanges object of all the
annotations combined. The
id, tx_id, gene_id, symbol, type. The
id column is a unique name, the
tx_id column is either a UCSC knownGene transcript ID (genic annotations) or a Ensembl transcript ID (lncRNA annotations), the
gene_id is the Entrez ID, the
symbol is the gene symbol from the
org.*.eg.db mapping from the Entrez ID, and the
type is of the form
1 2 3 4 5
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