build_cpg_annots: A helper function to build CpG related annotations.

Description Usage Arguments Value

View source: R/build_annotations.R

Description

Using the AnnotationHub package, extract CpG island track for the appropriate genome and construct the shores, shelves, and interCGI annotations as desired.

Usage

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Arguments

genome

The genome assembly.

annotations

A character vector with entries of the form [genome]_cpg_{islands,shores,shelves,inter}.

Value

A list of GRanges objects.


rcavalcante/annotatr documentation built on June 30, 2018, 4:10 p.m.