build_cpg_annots: A helper function to build CpG related annotations.
In rcavalcante/annotatr: Annotation of Genomic Regions to Genomic Annotations
View source: R/build_annotations.R
build_cpg_annots R Documentation
A helper function to build CpG related annotations.
Description
Using the AnnotationHub package, extract CpG island track for the appropriate genome and construct the shores, shelves, and interCGI annotations as desired.
Usage
build_cpg_annots(
genome = annotatr::builtin_genomes(),
annotations = annotatr::builtin_annotations()
)
Arguments
genome
The genome assembly.
annotations
A character vector with entries of the form [genome]_cpg_{islands,shores,shelves,inter}.
Value
A list of GRanges objects.
rcavalcante/annotatr documentation built on Aug. 22, 2024, 7:33 a.m.
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View source: R/build_annotations.R
| build_cpg_annots | R Documentation |
A helper function to build CpG related annotations.
Description
Using the AnnotationHub package, extract CpG island track for the appropriate genome and construct the shores, shelves, and interCGI annotations as desired.
Usage
build_cpg_annots(
genome = annotatr::builtin_genomes(),
annotations = annotatr::builtin_annotations()
)
Arguments
genome |
The genome assembly. |
annotations |
A character vector with entries of the form |
Value
A list of GRanges objects.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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