cluster_mat: Cluster Matrix Rows in Annotated Heatmaps

Description Usage Arguments

View source: R/aheatmap.R

Description

Cluster Matrix Rows in Annotated Heatmaps

Usage

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  cluster_mat(mat, param, distfun, hclustfun, reorderfun,
    na.rm = TRUE, subset = NULL, verbose = FALSE)

Arguments

mat

original input matrix that has already been appropriately subset in the caller function (aheatmap)

param

clustering specifications

distfun

Default distance method/function

hclustfun

Default clustering (linkage) method/function

reorderfun

Default reordering function

na.rm

Logical that specifies if NA values should be removed

subset

index (integer) vector specifying the subset indexes used to subset mat. This is required to be able to return the original indexes.


renozao/NMF documentation built on Aug. 21, 2018, 3:42 a.m.