Description Usage Arguments Value Methods (by generic)
The function consensushc
computes the hierarchical clustering of
a consensus matrix, using the matrix itself as a similarity matrix and
average linkage.
It is
1 2 3 4 5 6 7 8 9 10 | consensushc(object, ...)
## S4 method for signature 'matrix'
consensushc(object, method = "average", dendrogram = TRUE)
## S4 method for signature 'NMF'
consensushc(object, ...)
## S4 method for signature 'NMFfitX'
consensushc(object, what = c("consensus", "fit"), ...)
|
object |
a matrix or an |
... |
extra arguments passed to next method calls |
method |
linkage method passed to |
dendrogram |
a logical that specifies if the result of the hierarchical
clustering (en |
what |
character string that indicates which matrix to use in the computation. |
an object of class dendrogram
or hclust
depending on the
value of argument dendrogram
.
consensushc(object = matrix)
: Workhorse method for matrices.
consensushc(object = NMF)
: Compute the hierarchical clustering on the connectivity matrix of object
.
consensushc(object = NMFfitX)
: Compute the hierarchical clustering on the consensus matrix of object
,
or on the connectivity matrix of the best fit in object
.
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