| $,AnnotatedData-method |
Man page
|
| $,AnnotationData-method |
Man page
|
| $,NMF-method |
Man page
|
| $<-,AnnotatedData-method |
Man page
|
| $<-,AnnotationData-method |
Man page
|
| $<-,NMF-method |
Man page
|
| .DollarNames,NMF-method |
Man page
|
| .DollarNames.AnnotatedData |
Source code
|
| .DollarNames.NMF |
Man page
Source code
|
| .KL |
Source code
|
| .aheatmap_layout |
Source code
|
| .as.numeric |
Source code
|
| .atrack |
Man page
|
| .atrack,ANY-method |
Man page
|
| .atrack,ExpressionSet-method |
Man page
|
| .atrack,character-method |
Man page
|
| .atrack,data.frame-method |
Man page
|
| .atrack,matrix-method |
Man page
|
| .base_dendrogram |
Source code
|
| .basis |
Man page
|
| .basis,NMF-method |
Man page
|
| .basis,NMFfit-method |
Man page
|
| .basis,NMFstd-method |
Man page
|
| .basis<- |
Man page
|
| .basis<-,NMF,mMatrix-method |
Man page
|
| .basis<-,NMFfit,matrix-method |
Man page
|
| .basis<-,NMFstd,array-method |
Man page
|
| .basis<-,NMFstd,mMatrix-method |
Man page
|
| .checkResult |
Source code
|
| .cl_cleanup |
Source code
|
| .coef |
Man page
|
| .coef,NMF-method |
Man page
|
| .coef,NMFfit-method |
Man page
|
| .coef,NMFstd-method |
Man page
|
| .coef<- |
Man page
|
| .coef<-,NMF,mMatrix-method |
Man page
|
| .coef<-,NMFfit,matrix-method |
Man page
|
| .coef<-,NMFstd,array-method |
Man page
|
| .coef<-,NMFstd,mMatrix-method |
Man page
|
| .compare_NMF |
Source code
|
| .cssls |
Source code
|
| .dendextend |
Source code
|
| .extract.args |
Source code
|
| .extract.slots.parameters |
Source code
|
| .fcnnls |
Man page
Source code
|
| .foreach_regfun |
Source code
|
| .getRNG,NMFfitXn-method |
Man page
|
| .grid_dendrogram |
Source code
|
| .init.nmf.models |
Source code
|
| .isClassExported |
Source code
|
| .ls_nmf |
Source code
|
| .make_annotation |
Source code
|
| .match.call.args |
Source code
|
| .merge.override |
Source code
|
| .neg |
Source code
|
| .nndsvd.internal |
Source code
|
| .nndsvd.wrapper |
Source code
|
| .norm |
Source code
|
| .onAttach |
Source code
|
| .onLoad |
Source code
|
| .onLoad.nmf.bioc |
Source code
|
| .onUnload |
Source code
|
| .pos |
Source code
|
| .predict.nmf |
Source code
|
| .rss |
Source code
|
| .seqtime |
Source code
|
| .set.list.defaults |
Source code
|
| .showFixedTerms |
Source code
|
| .snmf |
Source code
|
| .snmf.objective |
Source code
|
| .translate.string |
Source code
|
| .use.grid.patch |
Man page
Source code
|
| .validFunctionSlot |
Source code
|
| .wrapResult |
Source code
|
| AnnotationData |
Source code
|
| C.ptr |
Source code
|
| ForeachBackend |
Man page
|
| ForeachBackend,ANY-method |
Man page
|
| ForeachBackend,NULL-method |
Man page
|
| ForeachBackend,character-method |
Man page
|
| ForeachBackend,cluster-method |
Man page
|
| ForeachBackend,doMPI_backend-method |
Man page
|
| ForeachBackend,doPSOCK_backend-method |
Man page
|
| ForeachBackend,doParallelMC_backend-method |
Man page
|
| ForeachBackend,doParallelSNOW_backend-method |
Man page
|
| ForeachBackend,doParallel_backend-method |
Man page
|
| ForeachBackend,missing-method |
Man page
|
| ForeachBackend,mpicluster-method |
Man page
|
| ForeachBackend,numeric-method |
Man page
|
| Frobenius-nmf |
Man page
|
| Internal-objects |
Man page
|
| KL-nmf |
Man page
|
| NMF |
Man page
|
| NMF-class |
Man page
|
| NMF-defunct |
Man page
|
| NMF-deprecated |
Man page
|
| NMF-package |
Man page
|
| NMFList-class |
Man page
|
| NMFOffset-class |
Man page
|
| NMFSeed |
Man page
|
| NMFSeed,NMFSeed-method |
Man page
|
| NMFSeed,character-method |
Man page
|
| NMFSeed-class |
Man page
|
| NMFStop |
Man page
Source code
|
| NMFStrategy |
Man page
|
| NMFStrategy,NMFStrategy,missing-method |
Man page
|
| NMFStrategy,NULL,NMFStrategy-method |
Man page
|
| NMFStrategy,NULL,character-method |
Man page
|
| NMFStrategy,character,NMFStrategy-method |
Man page
|
| NMFStrategy,character,character-method |
Man page
|
| NMFStrategy,character,function-method |
Man page
|
| NMFStrategy,character,missing-method |
Man page
|
| NMFStrategy,missing,character-method |
Man page
|
| NMFStrategy-class |
Man page
|
| NMFStrategyFunction-class |
Man page
|
| NMFStrategyIterative-class |
Man page
|
| NMFStrategyOctave-class |
Man page
|
| NMFfit |
Man page
Source code
|
| NMFfit-class |
Man page
|
| NMFfitX |
Man page
|
| NMFfitX,NMFfit-method |
Man page
|
| NMFfitX,NMFfitX-method |
Man page
|
| NMFfitX,list-method |
Man page
|
| NMFfitX-class |
Man page
|
| NMFfitX1-class |
Man page
|
| NMFfitXn-class |
Man page
|
| NMFns-class |
Man page
|
| NMFstd-class |
Man page
|
| R_std.divergence.update.h |
Source code
|
| R_std.divergence.update.w |
Source code
|
| R_std.euclidean.update.h |
Source code
|
| R_std.euclidean.update.w |
Source code
|
| SNMF/L-nmf |
Man page
|
| SNMF/R-nmf |
Man page
|
| Strategy-class |
Man page
|
| [,AnnotatedData,ANY,ANY,ANY-method |
Man page
|
| [,AnnotationData,ANY,ANY,ANY-method |
Man page
|
| [,NMF,ANY,ANY,ANY-method |
Man page
|
| [[,AnnotatedData-method |
Man page
|
| [[,AnnotationData-method |
Man page
|
| [[<-,AnnotatedData-method |
Man page
|
| [[<-,AnnotationData-method |
Man page
|
| _PACKAGE |
Man page
|
| adata |
Man page
Source code
|
| advanced-NMF |
Man page
|
| aggregate.measure |
Source code
|
| aheatmap |
Man page
Source code
|
| aheatmap_border |
Source code
|
| aheatmap_layout |
Man page
Source code
|
| alength |
Man page
Source code
|
| algorithm |
Man page
|
| algorithm,NMFList-method |
Man page
|
| algorithm,NMFSeed-method |
Man page
|
| algorithm,NMFStrategyFunction-method |
Man page
|
| algorithm,NMFStrategyOctave-method |
Man page
|
| algorithm,NMFfit-method |
Man page
|
| algorithm,NMFfitXn-method |
Man page
|
| algorithm<- |
Man page
|
| algorithm<-,NMFSeed,function-method |
Man page
|
| algorithm<-,NMFStrategyFunction,function-method |
Man page
|
| algorithm<-,NMFStrategyOctave,character-method |
Man page
|
| algorithm<-,NMFfit,ANY-method |
Man page
|
| algorithmic-NMF |
Man page
|
| amargin |
Man page
Source code
|
| aname |
Source code
|
| anames |
Man page
Source code
|
| annotationTrack |
Man page
Source code
|
| anyNA.NMF |
Man page
Source code
|
| anyValue |
Source code
|
| applyBy0 |
Source code
|
| as.NMFList |
Source code
|
| as_treedef |
Source code
|
| atrack |
Man page
Source code
|
| atrack_code |
Source code
|
| basis |
Man page
|
| basis,ANY-method |
Man page
|
| basis,NMF-method |
Man page
|
| basis,NMFfitXn-method |
Man page
|
| basis<- |
Man page
|
| basis<-,NMF-method |
Man page
|
| basiscor |
Man page
|
| basiscor,NMF,NMF-method |
Man page
|
| basiscor,NMF,matrix-method |
Man page
|
| basiscor,NMF,missing-method |
Man page
|
| basiscor,matrix,NMF-method |
Man page
|
| basismap |
Man page
|
| basismap,NMF-method |
Man page
|
| basismap,NMFfitX-method |
Man page
|
| basisnames |
Man page
|
| basisnames,ANY-method |
Man page
|
| basisnames<- |
Man page
|
| basisnames<-,ANY-method |
Man page
|
| bioc-NMF |
Man page
|
| border_gpar |
Source code
|
| border_gpar_list |
Source code
|
| brunet-nmf |
Man page
|
| brunet_M-nmf |
Man page
|
| brunet_R-nmf |
Man page
|
| bterms |
Man page
Source code
|
| bterms<- |
Man page
|
| bterms<-,NMFstd-method |
Man page
|
| c,NMF-method |
Man page
|
| c_gpar |
Source code
|
| canFit |
Man page
|
| canFit,NMFStrategy,NMF-method |
Man page
|
| canFit,NMFStrategy,character-method |
Man page
|
| canFit,character,ANY-method |
Man page
|
| ccBreaks |
Man page
Source code
|
| ccPalette |
Man page
Source code
|
| ccRamp |
Man page
Source code
|
| ccSpec |
Man page
Source code
|
| checkErrors |
Man page
Source code
|
| cleanupCluster |
Source code
|
| clone |
Source code
|
| clone2 |
Source code
|
| cluster_mat |
Man page
Source code
|
| cmp.cp |
Source code
|
| coef |
Man page
|
| coef,NMF-method |
Man page
|
| coef,NMFfitXn-method |
Man page
|
| coef<- |
Man page
|
| coef<-,NMF-method |
Man page
|
| coefficients |
Man page
|
| coefficients,NMF-method |
Man page
|
| coefmap |
Man page
|
| coefmap,NMF-method |
Man page
|
| coefmap,NMFfitX-method |
Man page
|
| colMax |
Source code
|
| colMin |
Source code
|
| compare |
Man page
|
| compare,NMFfit-method |
Man page
|
| compare,NMFfitXn-method |
Man page
|
| compare,list-method |
Man page
|
| compare-NMF |
Man page
|
| connectivity |
Man page
|
| connectivity,ANY-method |
Man page
|
| connectivity,NMF-method |
Man page
|
| connectivity,factor-method |
Man page
|
| connectivity,numeric-method |
Man page
|
| consensus |
Man page
|
| consensus,NMF-method |
Man page
|
| consensus,NMFfit-method |
Man page
|
| consensus,NMFfitX-method |
Man page
|
| consensus,NMFfitX1-method |
Man page
|
| consensus,NMFfitXn-method |
Man page
|
| consensushc |
Man page
|
| consensushc,NMF-method |
Man page
|
| consensushc,NMFfitX-method |
Man page
|
| consensushc,matrix-method |
Man page
|
| consensusmap |
Man page
|
| consensusmap,NMF-method |
Man page
|
| consensusmap,NMF.rank-method |
Man page
|
| consensusmap,NMFfitX-method |
Man page
|
| consensusmap,list-method |
Man page
|
| consensusmap,matrix-method |
Man page
|
| convert_annotations |
Source code
|
| cophcor |
Man page
|
| cophcor,NMFfitX-method |
Man page
|
| cophcor,matrix-method |
Man page
|
| corplot |
Source code
|
| crossprod_ |
Source code
|
| cterms |
Man page
Source code
|
| cterms<- |
Man page
|
| cterms<-,NMFstd-method |
Man page
|
| current.vpPath_patched |
Man page
|
| cutdendro |
Man page
Source code
|
| cutheight |
Source code
|
| d |
Source code
|
| defaultArgument |
Source code
|
| deviance |
Man page
|
| deviance,NMF-method |
Man page
|
| deviance,NMFStrategy-method |
Man page
|
| deviance,NMFfit-method |
Man page
|
| deviance,NMFfitX-method |
Man page
|
| dim,AnnotatedData-method |
Man page
|
| dim,NMF-method |
Man page
|
| dim,NMFfitXn-method |
Man page
|
| dim-NMF |
Man page
|
| dimnames,AnnotatedData-method |
Man page
|
| dimnames,AnnotationData-method |
Man page
|
| dimnames,NMF-method |
Man page
|
| dimnames-NMF |
Man page
|
| dimnames<-,AnnotatedData,ANY-method |
Man page
|
| dimnames<-,AnnotationData,ANY-method |
Man page
|
| dimnames<-,NMF,ANY-method |
Man page
|
| dispersion |
Man page
|
| dispersion,NMFfitX-method |
Man page
|
| dispersion,matrix-method |
Man page
|
| doBackendCleanup |
Source code
|
| draw_annotation_legend |
Source code
|
| draw_annotations |
Source code
|
| draw_annotations_label |
Source code
|
| draw_colnames |
Source code
|
| draw_dendrogram |
Source code
|
| draw_legend |
Source code
|
| draw_matrix |
Source code
|
| draw_rownames |
Source code
|
| entropy |
Man page
|
| entropy,ANY,ANY-method |
Man page
|
| entropy,NMFfitXn,ANY-method |
Man page
|
| entropy,factor,ANY-method |
Man page
|
| entropy,table,missing-method |
Man page
|
| esGolub |
Man page
|
| evar |
Man page
|
| evar,ANY-method |
Man page
|
| existsNMFMethod |
Man page
Source code
|
| existsNMFSeed |
Man page
Source code
|
| extractFeatures |
Man page
|
| extractFeatures,NMF-method |
Man page
|
| extractFeatures,matrix-method |
Man page
|
| fcnnls |
Man page
|
| fcnnls,ANY,numeric-method |
Man page
|
| fcnnls,matrix,matrix-method |
Man page
|
| fcnnls,numeric,matrix-method |
Man page
|
| featureNames,NMF-method |
Man page
|
| featureNames,NMFfitX-method |
Man page
|
| featureNames<-,NMF-method |
Man page
|
| featureScore |
Man page
|
| featureScore,NMF-method |
Man page
|
| featureScore,matrix-method |
Man page
|
| fit |
Man page
|
| fit,NMFfit-method |
Man page
|
| fit,NMFfitX-method |
Man page
|
| fit,NMFfitX1-method |
Man page
|
| fit,NMFfitXn-method |
Man page
|
| fit<- |
Man page
|
| fit<-,NMFfit,NMF-method |
Man page
|
| fitted |
Man page
|
| fitted,NMF-method |
Man page
|
| fitted,NMFOffset-method |
Man page
|
| fitted,NMFfit-method |
Man page
|
| fitted,NMFns-method |
Man page
|
| fitted,NMFstd-method |
Man page
|
| fixSweaveFigure |
Source code
|
| formatDoName |
Source code
|
| fterms |
Source code
|
| gVariable |
Man page
Source code
|
| generate_annotation_colours |
Source code
|
| generate_breaks |
Source code
|
| generate_dimnames |
Source code
|
| getAllCores |
Source code
|
| getDoBackend |
Man page
Source code
|
| getDoBackendInfo |
Source code
|
| getDoBackendName |
Source code
|
| getDoParHosts |
Man page
|
| getDoParHosts,ANY-method |
Man page
|
| getDoParNHosts |
Man page
Source code
|
| getDoParallelInfo |
Source code
|
| getDoParallelType |
Source code
|
| getMaxCores |
Source code
|
| getNMFMethod |
Man page
Source code
|
| getNMFSeed |
Man page
|
| getRNG1 |
Man page
|
| getRNG1,NMFfitX-method |
Man page
|
| getRNG1,NMFfitX1-method |
Man page
|
| getRNG1,NMFfitXn-method |
Man page
|
| grep_track |
Source code
|
| grid.base.mix |
Source code
|
| hasBasis |
Man page
Source code
|
| hasCoef |
Man page
Source code
|
| hasTrack |
Man page
Source code
|
| hash_function |
Source code
|
| heatmap-NMF |
Man page
|
| heatmap_motor |
Source code
|
| hostfile |
Man page
Source code
|
| ibasis |
Man page
Source code
|
| ibterms |
Man page
|
| ibterms,NMF-method |
Man page
|
| ibterms,NMFfit-method |
Man page
|
| ibterms,NMFfitX-method |
Man page
|
| ibterms,NMFstd-method |
Man page
|
| icoef |
Man page
Source code
|
| icterms |
Man page
|
| icterms,NMF-method |
Man page
|
| icterms,NMFfit-method |
Man page
|
| icterms,NMFstd-method |
Man page
|
| initialize,NMFOffset-method |
Man page
|
| is.Mac |
Source code
|
| is.atrack |
Man page
Source code
|
| is.backend |
Source code
|
| is.doSEQ |
Source code
|
| is.empty.nmf |
Man page
Source code
|
| is.eset |
Source code
|
| is.mixed |
Man page
Source code
|
| is.nmf |
Man page
Source code
|
| is.partial.nmf |
Man page
Source code
|
| is.same |
Source code
|
| isLogical |
Source code
|
| isMPIBackend |
Source code
|
| isNMFclass |
Source code
|
| isNMFfit |
Man page
Source code
|
| isRNGseed |
Source code
|
| isSweave |
Source code
|
| is_nmf_array |
Source code
|
| is_track_code |
Source code
|
| is_treedef |
Source code
|
| iterms |
Man page
Source code
|
| labels.AnnotationData |
Source code
|
| lee-nmf |
Man page
|
| lee_R-nmf |
Man page
|
| loadings,NMF-method |
Man page
|
| logs |
Man page
|
| logs,ANY-method |
Man page
|
| lsNMF-nmf |
Man page
|
| lverbose |
Man page
|
| matapply |
Source code
|
| match.basis |
Source code
|
| match_atrack |
Man page
Source code
|
| match_atrack_code |
Source code
|
| match_named_track |
Source code
|
| metaHeatmap |
Man page
|
| metaHeatmap,NMF-method |
Man page
|
| metaHeatmap,NMFfitX-method |
Man page
|
| metaHeatmap,matrix-method |
Man page
|
| metagenes |
Man page
|
| metagenes<- |
Man page
|
| metaprofiles |
Man page
|
| metaprofiles<- |
Man page
|
| methods-NMF |
Man page
|
| minfit |
Man page
|
| minfit,NMFfit-method |
Man page
|
| minfit,NMFfitX-method |
Man page
|
| minfit,NMFfitX1-method |
Man page
|
| minfit,NMFfitXn-method |
Man page
|
| misc |
Man page
Source code
|
| modelname |
Man page
|
| modelname,ANY-method |
Man page
|
| modelname,NMFStrategy-method |
Man page
|
| modelname,NMFfit-method |
Man page
|
| modelname,NMFfitXn-method |
Man page
|
| more |
Source code
|
| name |
Man page
|
| name,Strategy-method |
Man page
|
| name<- |
Man page
|
| name<-,Strategy,character-method |
Man page
|
| names,AnnotationData-method |
Man page
|
| names<-,AnnotationData-method |
Man page
|
| nbasis |
Man page
|
| nbasis,ANY-method |
Man page
|
| nbasis,NMFfitXn-method |
Man page
|
| nbterms |
Man page
Source code
|
| ncterms |
Man page
Source code
|
| neq.constraints.inplace |
Man page
Source code
|
| niter |
Man page
|
| niter,NMFfit-method |
Man page
|
| niter<- |
Man page
|
| niter<-,NMFfit,numeric-method |
Man page
|
| nmeta |
Man page
|
| nmf |
Man page
|
| nmf,ExpressionSet,ANY,ANY-method |
Man page
|
| nmf,data.frame,ANY,ANY-method |
Man page
|
| nmf,formula,ANY,ANY-method |
Man page
|
| nmf,mMatrix,NMF,ANY-method |
Man page
|
| nmf,mMatrix,NULL,ANY-method |
Man page
|
| nmf,mMatrix,data.frame,ANY-method |
Man page
|
| nmf,mMatrix,matrix,ANY-method |
Man page
|
| nmf,mMatrix,missing,ANY-method |
Man page
|
| nmf,mMatrix,numeric,NMFStrategy-method |
Man page
|
| nmf,mMatrix,numeric,NULL-method |
Man page
|
| nmf,mMatrix,numeric,character-method |
Man page
|
| nmf,mMatrix,numeric,function-method |
Man page
|
| nmf,mMatrix,numeric,list-method |
Man page
|
| nmf,mMatrix,numeric,missing-method |
Man page
|
| nmf,matrix,ExpressionSet,ANY-method |
Man page
|
| nmf.debug |
Source code
|
| nmf.equal |
Man page
|
| nmf.equal,NMF,NMF-method |
Man page
|
| nmf.equal,NMF,NMFfit-method |
Man page
|
| nmf.equal,NMF,NMFfitX-method |
Man page
|
| nmf.equal,NMFfit,NMF-method |
Man page
|
| nmf.equal,NMFfit,NMFfit-method |
Man page
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| nmf.equal,NMFfitX,NMF-method |
Man page
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| nmf.equal,NMFfitX1,NMFfitX1-method |
Man page
|
| nmf.equal,list,list-method |
Man page
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| nmf.equal,list,missing-method |
Man page
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| nmf.getOption |
Man page
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| nmf.options |
Man page
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| nmf.printOptions |
Man page
|
| nmf.resetOptions |
Man page
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| nmf.stop.connectivity |
Man page
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| nmf.stop.iteration |
Man page
Source code
|
| nmf.stop.stationary |
Man page
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| nmf.stop.threshold |
Man page
Source code
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| nmfAlgorithm |
Man page
Source code
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| nmfAlgorithm.Frobenius |
Man page
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| nmfAlgorithm.KL |
Man page
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| nmfAlgorithm.SNMF_L |
Man page
|
| nmfAlgorithm.SNMF_R |
Man page
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| nmfAlgorithm._lsNMF |
Man page
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| nmfAlgorithm.brunet |
Man page
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| nmfAlgorithm.brunet_M |
Man page
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| nmfAlgorithm.brunet_R |
Man page
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| nmfAlgorithm.lee |
Man page
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| nmfAlgorithm.lee_R |
Man page
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| nmfAlgorithm.nsNMF |
Man page
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| nmfAlgorithm.nsNMF_R |
Man page
|
| nmfAlgorithm.offset |
Man page
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| nmfAlgorithm.offset_R |
Man page
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| nmfAlgorithmInfo |
Source code
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| nmfApply |
Man page
Source code
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| nmfArgs |
Man page
Source code
|
| nmfCheck |
Man page
Source code
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| nmfDistance |
Man page
Source code
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| nmfEstimateRank |
Man page
Source code
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| nmfFormals |
Man page
Source code
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| nmfFormals.NMFStrategy |
Man page
Source code
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| nmfFormals.NMFStrategyFunction |
Man page
Source code
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| nmfFormals.NMFStrategyIterative |
Man page
Source code
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| nmfFormals.character |
Man page
Source code
|
| nmfGet |
Source code
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| nmfInfo |
Source code
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| nmfModel |
Man page
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| nmfModel,ANY,ExpressionSet-method |
Man page
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| nmfModel,ExpressionSet,ANY-method |
Man page
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| nmfModel,NULL,ANY-method |
Man page
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| nmfModel,data.frame,data.frame-method |
Man page
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| nmfModel,formula,ANY-method |
Man page
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| nmfModel,matrix,ANY-method |
Man page
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| nmfModel,matrix,matrix-method |
Man page
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| nmfModel,missing,ANY-method |
Man page
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| nmfModel,missing,missing-method |
Man page
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| nmfModel,numeric,matrix-method |
Man page
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| nmfModel,numeric,missing-method |
Man page
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| nmfModel,numeric,numeric-method |
Man page
|
| nmfModels |
Man page
Source code
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| nmfObject |
Man page
Source code
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| nmfRegisterAlgorithm |
Man page
|
| nmfRegistry |
Source code
|
| nmfReport |
Man page
Source code
|
| nmfSeed |
Man page
Source code
|
| nmfSeedInfo |
Source code
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| nmfWrapper |
Man page
Source code
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| nmf_snmf |
Source code
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| nmf_stop |
Source code
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| nmf_update.KL |
Man page
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| nmf_update.KL.h |
Man page
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| nmf_update.KL.h_R |
Man page
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| nmf_update.KL.w |
Man page
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| nmf_update.KL.w_R |
Man page
|
| nmf_update.brunet |
Man page
Source code
|
| nmf_update.brunet_R |
Man page
Source code
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| nmf_update.euclidean |
Man page
|
| nmf_update.euclidean.h |
Man page
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| nmf_update.euclidean.h_R |
Man page
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| nmf_update.euclidean.w |
Man page
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| nmf_update.euclidean.w_R |
Man page
|
| nmf_update.euclidean_offset.h |
Man page
Source code
|
| nmf_update.euclidean_offset.w |
Man page
Source code
|
| nmf_update.lee |
Man page
Source code
|
| nmf_update.lee_R |
Man page
Source code
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| nmf_update.lnmf |
Source code
|
| nmf_update.lsnmf |
Man page
Source code
|
| nmf_update.ns |
Man page
Source code
|
| nmf_update.ns_R |
Man page
Source code
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| nmf_update.offset |
Man page
Source code
|
| nmf_update.offset_R |
Man page
Source code
|
| nmf_update.penmf |
Source code
|
| nmf_update_R.lnmf |
Source code
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| nmf_warning |
Source code
|
| nneg |
Man page
|
| nneg,ExpressionSet-method |
Man page
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| nneg,NMF-method |
Man page
|
| nneg,matrix-method |
Man page
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| nrun |
Man page
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| nrun,ANY-method |
Man page
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| nrun,NMF-method |
Man page
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| nrun,NMFfit-method |
Man page
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| nrun,NMFfitX-method |
Man page
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| nrun,NMFfitX1-method |
Man page
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| nrun,NMFfitXn-method |
Man page
|
| nsNMF_R-nmf |
Man page
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| nterms |
Man page
Source code
|
| objective |
Man page
|
| objective,NMFStrategy-method |
Man page
|
| objective,NMFfit-method |
Man page
|
| objective<- |
Man page
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| objective<-,NMFStrategy,character-method |
Man page
|
| objective<-,NMFStrategy,function-method |
Man page
|
| objective<-,NMFfit,ANY-method |
Man page
|
| offset,NMFOffset-method |
Man page
|
| offset,NMFfit-method |
Man page
|
| offset_R-nmf |
Man page
|
| options |
Man page
|
| pal |
Source code
|
| parallel-NMF |
Man page
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| parse_formula |
Man page
Source code
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| penmf.objective |
Source code
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| plot,NMFList,missing-method |
Man page
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| plot,NMFfit,missing-method |
Man page
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| plot.NMF.consensus |
Source code
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| plot.NMF.rank |
Man page
Source code
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| pmax.inplace |
Man page
Source code
|
| posICA |
Source code
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| posneg |
Man page
Source code
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| predict |
Man page
|
| predict,NMF-method |
Man page
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| predict,NMFfitX-method |
Man page
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| print.fcnnls |
Man page
Source code
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| print.foreach_backend |
Source code
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| process_tracks |
Source code
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| profcor |
Man page
|
| profcor,NMF,NMF-method |
Man page
|
| profcor,NMF,matrix-method |
Man page
|
| profcor,NMF,missing-method |
Man page
|
| profcor,matrix,NMF-method |
Man page
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| profplot |
Man page
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| profplot.default |
Man page
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| purity |
Man page
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| purity,ANY,ANY-method |
Man page
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| purity,NMFfitXn,ANY-method |
Man page
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| purity,factor,ANY-method |
Man page
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| purity,table,missing-method |
Man page
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| quick_str |
Source code
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| randomize |
Man page
Source code
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| register |
Man page
Source code
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| register.doMPI_backend |
Man page
Source code
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| register.doParallel_backend |
Man page
Source code
|
| register.foreach_backend |
Man page
Source code
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| registerDoBackend |
Man page
Source code
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| registryContributors |
Source code
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| removeNMFMethod |
Man page
Source code
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| removeNMFSeed |
Man page
Source code
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| renderAnnotations |
Source code
|
| residuals |
Man page
|
| residuals,NMFfit-method |
Man page
|
| residuals,NMFfitX-method |
Man page
|
| residuals<- |
Man page
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| residuals<-,NMFfit-method |
Man page
|
| rev.aheatmap_treedef |
Source code
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| revPalette |
Man page
Source code
|
| rmAttributes |
Source code
|
| rmatrix |
Man page
|
| rmatrix,ANY-method |
Man page
|
| rmatrix,NMF-method |
Man page
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| rmatrix,numeric-method |
Man page
|
| rmatrix_int |
Man page
Source code
|
| rnmf |
Man page
|
| rnmf,ANY,ExpressionSet-method |
Man page
|
| rnmf,ANY,data.frame-method |
Man page
|
| rnmf,ANY,mMatrix-method |
Man page
|
| rnmf,NMF,missing-method |
Man page
|
| rnmf,NMF,numeric-method |
Man page
|
| rnmf,NMFOffset,numeric-method |
Man page
|
| rnmf,formula,ANY-method |
Man page
|
| rnmf,missing,missing-method |
Man page
|
| rnmf,numeric,missing-method |
Man page
|
| rnmf,numeric,numeric-method |
Man page
|
| round.pretty |
Source code
|
| rposneg |
Man page
|
| rposneg,ExpressionSet-method |
Man page
|
| rposneg,NMF-method |
Man page
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| rposneg,matrix-method |
Man page
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| rss |
Man page
|
| rss,ANY-method |
Man page
|
| rss,matrix-method |
Man page
|
| run |
Man page
|
| run,NMFStrategy,ExpressionSet,ANY-method |
Man page
|
| run,NMFStrategy,mMatrix,NMF-method |
Man page
|
| run,NMFStrategy,mMatrix,NMFfit-method |
Man page
|
| run,NMFStrategyFunction,matrix,NMFfit-method |
Man page
|
| run,NMFStrategyIterative,mMatrix,NMFfit-method |
Man page
|
| run,NMFStrategyIterativeX,mMatrix,NMFfit-method |
Man page
|
| run,NMFStrategyOctave,matrix,NMFfit-method |
Man page
|
| runit.lsnmf |
Source code
|
| runtime |
Man page
|
| runtime,NMFList-method |
Man page
|
| runtime,NMFfit-method |
Man page
|
| runtime.all |
Man page
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| runtime.all,NMFfit-method |
Man page
|
| runtime.all,NMFfitX-method |
Man page
|
| runtime.all,NMFfitXn-method |
Man page
|
| sampleNames,NMF-method |
Man page
|
| sampleNames,NMFfitX-method |
Man page
|
| sampleNames<-,NMF,ANY-method |
Man page
|
| scale.NMF |
Man page
Source code
|
| scale_colours |
Source code
|
| scale_mat |
Source code
|
| scale_vec_colours |
Source code
|
| scoef |
Man page
|
| scoef,NMF-method |
Man page
|
| scoef,matrix-method |
Man page
|
| seed |
Man page
|
| seed,ANY,ANY,NULL-method |
Man page
|
| seed,ANY,ANY,character-method |
Man page
|
| seed,ANY,ANY,function-method |
Man page
|
| seed,ANY,ANY,missing-method |
Man page
|
| seed,ANY,ANY,numeric-method |
Man page
|
| seed,ANY,list,NMFSeed-method |
Man page
|
| seed,ANY,numeric,NMFSeed-method |
Man page
|
| seed,ExpressionSet,ANY,ANY-method |
Man page
|
| seed,mMatrix,NMF,NMFSeed-method |
Man page
|
| seeding |
Man page
|
| seeding,NMFfit-method |
Man page
|
| seeding,NMFfitXn-method |
Man page
|
| seeding<- |
Man page
|
| seeding<-,NMFfit-method |
Man page
|
| selectNMFMethod |
Man page
Source code
|
| seqtime |
Man page
|
| seqtime,NMFList-method |
Man page
|
| seqtime,NMFfitXn-method |
Man page
|
| setBackendCleanup |
Source code
|
| setDoBackend |
Man page
Source code
|
| setNMFMethod |
Man page
Source code
|
| setNMFSeed |
Man page
Source code
|
| setupBackend |
Man page
Source code
|
| setupLibPaths |
Man page
Source code
|
| setupRNG |
Man page
Source code
|
| setupSharedMemory |
Man page
Source code
|
| setupTempDirectory |
Man page
Source code
|
| show,NMF-method |
Man page
|
| show,NMFList-method |
Man page
|
| show,NMFOffset-method |
Man page
|
| show,NMFSeed-method |
Man page
|
| show,NMFStrategy-method |
Man page
|
| show,NMFStrategyIterative-method |
Man page
|
| show,NMFStrategyOctave-method |
Man page
|
| show,NMFfit-method |
Man page
|
| show,NMFfitX-method |
Man page
|
| show,NMFfitX1-method |
Man page
|
| show,NMFfitXn-method |
Man page
|
| show,NMFns-method |
Man page
|
| show,NMFstd-method |
Man page
|
| siNMF |
Source code
|
| siNMF_R |
Source code
|
| silhouette.NMF |
Man page
|
| silhouette.NMFfitX |
Man page
|
| smoothing |
Man page
Source code
|
| snmf.objective |
Source code
|
| sparseness |
Man page
|
| sparseness,NMF-method |
Man page
|
| sparseness,matrix-method |
Man page
|
| sparseness,numeric-method |
Man page
|
| staticVar |
Man page
|
| std.divergence.update.h |
Source code
|
| std.divergence.update.w |
Source code
|
| std.euclidean.update.h |
Source code
|
| std.euclidean.update.w |
Source code
|
| stop-NMF |
Man page
|
| str_args |
Man page
Source code
|
| str_dim |
Source code
|
| str_match |
Source code
|
| subset2orginal_idx |
Source code
|
| subsetMargin |
Source code
|
| subset_index |
Source code
|
| sum2one |
Source code
|
| summary |
Man page
|
| summary,NMF-method |
Man page
|
| summary,NMFList-method |
Man page
|
| summary,NMFfit-method |
Man page
|
| summary,NMFfitX-method |
Man page
|
| summary-NMF |
Man page
|
| summary.NMF.rank |
Man page
Source code
|
| sweaveFile |
Source code
|
| sweaveLabel |
Source code
|
| syntheticNMF |
Man page
Source code
|
| t.NMF |
Man page
Source code
|
| t.NMFstd |
Source code
|
| tcrossprod_ |
Source code
|
| test.match_atrack |
Source code
|
| toNumeric |
Source code
|
| trackError |
Man page
Source code
|
| trans_segment |
Source code
|
| tryViewport |
Man page
Source code
|
| ts_eval |
Man page
Source code
|
| ts_tempfile |
Man page
Source code
|
| tsvd |
Source code
|
| txtProgressBar |
Man page
|
| utils-NMF |
Man page
|
| vmessage |
Source code
|
| vplayout |
Source code
|
| wheel |
Source code
|
| which.best |
Man page
Source code
|
| wrss |
Man page
Source code
|
| xifyStrategy |
Source code
|
