Files in renozao/NMF
Algorithms and Framework for Nonnegative Matrix Factorization (NMF)
.Rbuildignore
.Rinstignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS
NMF.Rproj
R/AnnotatedData-class.R
R/AnnotatedData-methods.R
R/Bioc-layer.R
R/NMF-class.R
R/NMFOffset-class.R
R/NMFSeed-class.R
R/NMFSet-class.R
R/NMFStrategy-class.R
R/NMFStrategyFunction-class.R
R/NMFStrategyIterative-class.R
R/NMFStrategyOctave-class.R
R/NMFfit-class.R
R/NMFns-class.R
R/NMFplots.R
R/NMFstd-class.R
R/aaa-package.R
R/aheatmap.R
R/algorithmic.R
R/algorithms-base.R
R/algorithms-brunet.R
R/algorithms-lnmf.R
R/algorithms-lsnmf.R
R/algorithms-pe-nmf.R
R/algorithms-siNMF.R
R/algorithms-snmf.R
R/atracks.R
R/colorcode.R
R/data.R
R/extractFeatures.R
R/fixed-terms.R
R/grid.R
R/heatmaps.R
R/nmf.R
R/nmfModel.R
R/options.R
R/parallel.R
R/registry-algorithms.R
R/registry-seed.R
R/registry.R
R/rmatrix.R
R/rnmf.R
R/run.R
R/seed-base.R
R/seed-ica.R
R/seed-nndsvd.R
R/setNMFClass.R
R/simulation.R
R/tests.R
R/transforms.R
R/utils.R
R/versions.R
README.md
TODO
data/esGolub.rda
demo/00Index
demo/aheatmap.R
demo/heatmaps.R
demo/lsNMF-nmf.R
demo/nmf.R
inst/CITATION
inst/REFERENCES.bib
inst/doc/NMF-vignette.pdf
inst/doc/aheatmaps.pdf
inst/doc/heatmaps.pdf
inst/m-files/brunet-run.m
inst/m-files/brunet.R
inst/m-files/brunet.m
inst/scripts/grid.R
inst/scripts/report.Rmd
man-roxygen/VirtualNMF.R
man/Frobenius-nmf.Rd
man/Internal-objects.Rd
man/KL-nmf.Rd
man/NMF-class.Rd
man/NMF-defunct.Rd
man/NMF-deprecated.Rd
man/NMF-package.Rd
man/NMFList-class.Rd
man/NMFOffset-class.Rd
man/NMFSeed-class.Rd
man/NMFStrategy-class.Rd
man/NMFStrategy.Rd
man/NMFStrategyFunction-class.Rd
man/NMFStrategyIterative-class.Rd
man/NMFStrategyOctave-class.Rd
man/NMFfit-class.Rd
man/NMFfitX-class.Rd
man/NMFfitX.Rd
man/NMFfitX1-class.Rd
man/NMFfitXn-class.Rd
man/NMFns-class.Rd
man/NMFstd-class.Rd
man/RNG.Rd
man/SNMF-nmf.Rd
man/Strategy-class.Rd
man/advanced.Rd
man/aheatmap.Rd
man/aheatmap_layout.Rd
man/algorithmic.Rd
man/assess.Rd
man/atrack.Rd
man/basis-coef-methods.Rd
man/basiscor.Rd
man/bioc.Rd
man/canFit.Rd
man/ccBreaks.Rd
man/ccPalette.Rd
man/ccRamp.Rd
man/ccSpec.Rd
man/checkErrors.Rd
man/cluster_mat.Rd
man/connectivity.Rd
man/consensushc.Rd
man/cophcor.Rd
man/cutdendro.Rd
man/deviance.Rd
man/dimnames.Rd
man/dims.Rd
man/dispersion.Rd
man/dot-fcnnls.Rd
man/esGolub.Rd
man/fcnnls.Rd
man/fit.Rd
man/fitted.Rd
man/foreach.Rd
man/grid.Rd
man/heatmaps.Rd
man/inplace.Rd
man/lsNMF-nmf.Rd
man/lverbose.Rd
man/match_atrack.Rd
man/nmf-compare.Rd
man/nmf.Rd
man/nmf.equal.Rd
man/nmfAlgorithm.Rd
man/nmfApply.Rd
man/nmfCheck.Rd
man/nmfEstimateRank.Rd
man/nmfFormals.Rd
man/nmfModel.Rd
man/nmfObject.Rd
man/nmfReport.Rd
man/nmfSeed.Rd
man/nmfWrapper.Rd
man/nmf_update_KL.Rd
man/nmf_update_euclidean.Rd
man/nneg.Rd
man/nsNMF-nmf.Rd
man/offset-nmf.Rd
man/options.Rd
man/parallel.Rd
man/parse_formula.Rd
man/predict.Rd
man/profplot.Rd
man/purity.Rd
man/randomize.Rd
man/registry-algorithm.Rd
man/residuals.Rd
man/revPalette.Rd
man/rmatrix.Rd
man/rnmf.Rd
man/rss.Rd
man/scores.Rd
man/seed.Rd
man/setNMFMethod.Rd
man/setNMFSeed.Rd
man/setup.Rd
man/smoothing.Rd
man/sparseness.Rd
man/staticVar.Rd
man/stop-NMF.Rd
man/subset-NMF.Rd
man/syntheticNMF.Rd
man/terms-internal.Rd
man/terms.Rd
man/txtProgressBar.Rd
man/types.Rd
man/utils.Rd
src/NMF_init.c
src/distance.cpp
src/divergence.cpp
src/euclidean.cpp
src/utils.cpp
tests/testthat.R
tests/testthat/test-NMFSet.R
tests/testthat/test-NMFStrategy-class.R
tests/testthat/test-NMFclass.R
tests/testthat/test-NMFfit-class.R
tests/testthat/test-aheatmap.R
tests/testthat/test-algorithms.R
tests/testthat/test-bioc.R
tests/testthat/test-distance.R
tests/testthat/test-interface.R
tests/testthat/test-options.R
tests/testthat/test-parallel.R
tests/testthat/test-seed.R
tests/testthat/test-utils.R
vignettes/.install_extras
vignettes/NMF-vignette.Rnw
vignettes/NMF-vignette.tex
vignettes/Rpackages.bib
vignettes/aheatmaps.Rnw
vignettes/aheatmaps.tex
vignettes/consensus.pdf
vignettes/heatmaps.Rnw
vignettes/src/bmc.R
