Files in richardsprague/actino
Phyloseq utilities for personal microbiome
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/actinoCSV.R
R/actinoJSON.R
R/actinoUtils.R
R/actino_data.R
R/sample_phylo_tree.tre.txt
R/zzz.R
README.Rmd
README.md
README_files/figure-markdown_github/heatmapDemo-1.png
README_files/figure-markdown_github/ordinationDemo-1.png
README_files/figure-markdown_github/plotKombucha-1.png
actino.R
actino.Rproj
data/.Rapp.history
data/kombucha.all_ranks.rda
data/kombucha.csv.rda
data/kombucha.genus.rda
hello.R
inst/extdata/2016-07-26-gut-73813.json
inst/extdata/2016-07-27-gut-73837.json
inst/extdata/2016-07-28-gut-73814.json
inst/extdata/2016-07-28-mouth-75453.json
inst/extdata/2016-07-28-nose-75057.json
inst/extdata/2016-07-29-gut-74607.json
inst/extdata/2016-07-30-mouth-75461.json
inst/extdata/2016-07-31-gut1-74573.json
inst/extdata/2016-08-01-gut-74561.json
inst/extdata/2016-08-02-gut-75657.json
inst/extdata/2016-08-03-gut-75637.json
inst/extdata/2016-08-04-gut-75625.json
inst/extdata/2016-08-04-gut-78351.json
inst/extdata/2016-08-04-mouth-75682.json
inst/extdata/2016-08-05-genital-75138.json
inst/extdata/2016-08-05-gut-75519.json
inst/extdata/2016-08-05-mouth-75463.json
inst/extdata/2016-08-05-nose-75075.json
inst/extdata/2016-08-05-skin-74907.json
inst/extdata/dummyData/2016-08-05-gut-75519.json
inst/extdata/dummyData/2017-01-10-dummy-755190.json
inst/extdata/dummyData/Dummy_User_Mapfile.xlsx
inst/extdata/kombucha-mapfile.xlsx
inst/extdata/pj.RData
inst/extdata/ubiome-export-74607.csv
man/convert_json_files_to_csv.Rd
man/dataframe_at_rank.Rd
man/experiment_to_phyloseq.Rd
man/full_taxa.Rd
man/join_all_ubiome_files.Rd
man/join_all_ubiome_files_full.Rd
man/just_json_files_in.Rd
man/kombucha.all_ranks.Rd
man/kombucha.csv.Rd
man/kombucha.genus.Rd
man/matrix_at_rank.Rd
man/phyloseq_from_JSON.Rd
man/phyloseq_from_JSON_at_rank.Rd
man/read_ubiome_json.Rd
man/read_ubiome_json_full.Rd
man/samples_as_column_dataframe.Rd
man/tax_abbrev.Rd
man/tax_rank_of_full_taxa.Rd
tests/testthat.R
tests/testthat/test-phyloseq.R
tests/testthat/test-reading.R
tests/testthat/test-utils.R
