check_plink_text_data: Check if the 'PLINK' text data is valid.

In richelbilderbeek/plinkr: Interface to PLINK

Check if the PLINK text data is valid.

Description

Check if the PLINK text data is valid. Will stop if not.

Usage

check_plink_text_data(plink_text_data)

Arguments

plink_text_data

the genetic and phenotypic data for PLINK to work on, in PLINK text format, as created by create_plink_text_data.

Value

nothing

Author(s)

Richèl J.C. Bilderbeek

See Also

plinkr has the following functions to check if in-memory data is valid:

• PLINK text data: use check_plink_text_data

• PLINK binary data: use check_plink_bin_data

• PLINK2 binary data: use check_plink2_bin_data

• any PLINK/PLINK2 data: use check_data

• quantitative trait analysis data: use check_assoc_qt_data

Examples

plink_text_data <- create_plink_text_data(
  ped_table = get_test_ped_table(),
  map_table = get_test_map_table()
)
check_plink_text_data(plink_text_data)

richelbilderbeek/plinkr documentation built on March 25, 2024, 3:18 p.m.