check_plink_version_and_data_can_work_together: Internal function to check if the 'PLINK'/'PLINK2' version...

In richelbilderbeek/plinkr: Interface to PLINK

Internal function to check if the PLINK/PLINK2 version can work together with the data.

Description

Check that the PLINK/PLINK2 version can work together with the data (PLINK text data, PLINK binary data, PLINK2 binary data). Will stop if not

Usage

check_plink_version_and_data_can_work_together(data, plink_options)

Arguments

data

the data source, which can be: PLINK text data, as created by create_plink_text_data. PLINK binary data, as created by create_plink_bin_data. PLINK2 binary data, as created by create_plink2_bin_data. PLINK text filenames, as created by create_plink_text_filenames. PLINK binary filenames, as created by create_plink_bin_filenames. PLINK2 binary filenames, as created by create_plink2_bin_filenames. data to be used by assoc, as created by create_assoc_data data to be used by assoc_qt, as created by create_assoc_qt_data

plink_options

options to run PLINK, as created by create_plink_options

Details

PLINK version	data	expected
PLINK	PLINK1 text data	OK
PLINK	PLINK1 bin data	OK
PLINK	PLINK2 bin data	Error
PLINK2	PLINK1 text data	Error
PLINK2	PLINK1 bin data	Error
PLINK2	PLINK2 bin data	OK

Value

nothing

richelbilderbeek/plinkr documentation built on March 25, 2024, 3:18 p.m.