check_pvar_table: Check if a '.pvar' table is valid.
In richelbilderbeek/plinkr: Interface to PLINK
View source: R/check_pvar_table.R
check_pvar_table R Documentation
Check if a .pvar table is valid.
Description
Check if a .pvar table is valid.
Will stop if not
Usage
check_pvar_table(pvar_table)
Arguments
pvar_table
a tibble with as much rows as
SNPs. It has the following columns:
-
CHROM: the chromosome
-
POS: the position on the chromosome
-
ID: the SNP ID
-
REF: the reference variant
-
ALT: the alternate variant
The uppercase column names are those as used by PLINK2.
Value
Nothing. Will stop if the pvar_table is invalid
Author(s)
Richèl J.C. Bilderbeek
Examples
check_pvar_table(get_test_pvar_table())
richelbilderbeek/plinkr documentation built on March 25, 2024, 3:18 p.m.
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View source: R/check_pvar_table.R
| check_pvar_table | R Documentation |
Check if a .pvar table is valid.
Description
Check if a .pvar table is valid.
Will stop if not
Usage
check_pvar_table(pvar_table)
Arguments
pvar_table |
a tibble with as much rows as SNPs. It has the following columns:
The uppercase column names are those as used by PLINK2. |
Value
Nothing. Will stop if the pvar_table is invalid
Author(s)
Richèl J.C. Bilderbeek
Examples
check_pvar_table(get_test_pvar_table())
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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