check_snvs: Check the single nucleotide variations.
In richelbilderbeek/plinkr: Interface to PLINK
check_snvs R Documentation
Check the single nucleotide variations.
Description
Check if the single nucleotide variations are valid,
will stop if not
Usage
check_snvs(snvs)
Arguments
snvs
a tibble that contains the
two nucleotide calls for multiple individuals.
Each column is a haplotype, hence, for a diploid organism,
there are two columns.
Each individual is represented by a row.
Nucleotides are in uppercase.
Per SNV table, there can be only two different nucleotides,
as this is how a SNP works; a SNP from A to C is a different one (and
has a different SNP ID) than a SNP that encodes a mutation
for A to G.
Use create_snvs to create a snvs.
Author(s)
Richèl J.C. Bilderbeek
richelbilderbeek/plinkr documentation built on March 25, 2024, 3:18 p.m.
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| check_snvs | R Documentation |
Check the single nucleotide variations.
Description
Check if the single nucleotide variations are valid, will stop if not
Usage
check_snvs(snvs)
Arguments
snvs |
a tibble that contains the
two nucleotide calls for multiple individuals.
Each column is a haplotype, hence, for a diploid organism,
there are two columns.
Each individual is represented by a row.
Nucleotides are in uppercase.
Per SNV table, there can be only two different nucleotides,
as this is how a SNP works; a SNP from A to C is a different one (and
has a different SNP ID) than a SNP that encodes a mutation
for A to G.
Use create_snvs to create a |
Author(s)
Richèl J.C. Bilderbeek
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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