compare_assoc_qt_speed: Compare speed when using assoc_qt for one 'assoc_qt_params'...

In richelbilderbeek/plinkr: Interface to PLINK

Compare speed when using assoc_qt for one assoc_qt_params for (one or) multiple versions of PLINK/PLINK2

Description

Compare speed when using assoc_qt for one assoc_qt_params for (one or) multiple versions of PLINK/PLINK2

Usage

compare_assoc_qt_speed(
  n_individuals = 5,
  n_phenotypes = 3,
  n_snps_per_phenotype = 4,
  assoc_qt_params = create_test_assoc_qt_params(),
  plink_optionses = create_plink_optionses(),
  verbose = FALSE
)

Arguments

n_individuals	the number of individuals. Use check_n_individuals to check if this is a valid value
n_phenotypes	the number of phenotypes
n_snps_per_phenotype	the number of SNPs that determine one phenotype
assoc_qt_params	parameters to do an association analysis for a quantitative trait (i.e. using assoc_qt), as can be created by create_assoc_qt_params
plink_optionses	a list of one or more options to run PLINK, as created by create_plink_optionses. The reduplicated plural was used to express this is a list of plink_options, instead of one set of plink_options
verbose	the verbosity of a function. Set to TRUE for more output. Use check_verbose to detect if this argument is valid.

Value

A tibble

Author(s)

Richèl J.C. Bilderbeek

richelbilderbeek/plinkr documentation built on March 25, 2024, 3:18 p.m.