convert_plink2_bin_files_to_plink_bin_files: Convert 'PLINK2' binary data files to 'PLINK' binary data...

In richelbilderbeek/plinkr: Interface to PLINK

Convert PLINK2 binary data files to PLINK binary data files

Description

Convert PLINK2 binary data files to PLINK binary data files

Usage

convert_plink2_bin_files_to_plink_bin_files(
  base_input_filename,
  base_output_filename = file.path(dirname(base_input_filename), "output"),
  plink_options = create_plink_v2_0_options(),
  verbose = FALSE
)

Arguments

base_input_filename	the base of the filenames that are used as input for PLINK/PLINK2
base_output_filename	the base of the filenames that are used as output for PLINK/PLINK2
plink_options	options to run PLINK, as created by create_plink_options
verbose	the verbosity of a function. Set to TRUE for more output. Use check_verbose to detect if this argument is valid.

Value

a list with the following elements:

• bed_filename: the full .bed filename

• bim_filename: the full .bim filename

• fam_filename: the full .fam filename

• log_filename: the full .log filename

Author(s)

Richèl J.C. Bilderbeek

See Also

these are the functions to convert between the PLINK and PLINK2 files:

• To convert from PLINK1 text files

  • to PLINK1 binary files: use convert_plink_text_files_to_plink_bin_files

  • to PLINK2 binary files, use convert_plink_text_files_to_plink2_bin_files

• To convert from PLINK1 binary files

  • to PLINK text files, use convert_plink_bin_files_to_plink_text_files

  • to PLINK2 binary files, use convert_plink_bin_files_to_plink2_bin_files

• To convert from PLINK2 binary files

  • to PLINK text files, use convert_plink2_bin_files_to_plink_text_files

  • to PLINK binary files, use convert_plink2_bin_files_to_plink_bin_files

richelbilderbeek/plinkr documentation built on March 25, 2024, 3:18 p.m.