convert_psam_table_to_fam_table: Convert a 'PLINK2' '.psam' table to a 'PLINK' '.fam' table
In richelbilderbeek/plinkr: Interface to PLINK
View source: R/convert_psam_table_to_fam_table.R
convert_psam_table_to_fam_table R Documentation
Convert a PLINK2 .psam table to a PLINK .fam table
Description
Convert a PLINK2 .psam table to a PLINK .fam table
Usage
convert_psam_table_to_fam_table(psam_table, verbose = FALSE)
Arguments
psam_table
a tibble with as much rows as
individuals. It has the following columns:
-
FID: the family ID
-
IID: the within-family ID
-
SEX: the sex
-
PHENO1: a phenotypic value
The uppercase column names are those as used by PLINK2.
verbose
the verbosity of a function.
Set to TRUE for more output.
Use check_verbose to detect if this argument is valid.
Value
a PLINK .fam table
Author(s)
Richèl J.C. Bilderbeek
richelbilderbeek/plinkr documentation built on March 25, 2024, 3:18 p.m.
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View source: R/convert_psam_table_to_fam_table.R
| convert_psam_table_to_fam_table | R Documentation |
Convert a PLINK2 .psam table to a PLINK .fam table
Description
Convert a PLINK2 .psam table to a PLINK .fam table
Usage
convert_psam_table_to_fam_table(psam_table, verbose = FALSE)
Arguments
psam_table |
a tibble with as much rows as individuals. It has the following columns:
The uppercase column names are those as used by PLINK2. |
verbose |
the verbosity of a function. Set to TRUE for more output. Use check_verbose to detect if this argument is valid. |
Value
a PLINK .fam table
Author(s)
Richèl J.C. Bilderbeek
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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