convert_pvar_table_to_bim_table: Convert a 'PLINK2' '.pvar' table to a 'PLINK' '.bim' table
In richelbilderbeek/plinkr: Interface to PLINK
View source: R/convert_pvar_table_to_bim_table.R
convert_pvar_table_to_bim_table R Documentation
Convert a PLINK2 .pvar table to a PLINK .bim table
Description
Convert a PLINK2 .pvar table to a PLINK .bim table
Usage
convert_pvar_table_to_bim_table(pvar_table, verbose = FALSE)
Arguments
pvar_table
a tibble with as much rows as
SNPs. It has the following columns:
-
CHROM: the chromosome
-
POS: the position on the chromosome
-
ID: the SNP ID
-
REF: the reference variant
-
ALT: the alternate variant
The uppercase column names are those as used by PLINK2.
verbose
the verbosity of a function.
Set to TRUE for more output.
Use check_verbose to detect if this argument is valid.
Value
a PLINK .bim table
Author(s)
Richèl J.C. Bilderbeek
richelbilderbeek/plinkr documentation built on March 25, 2024, 3:18 p.m.
R Package Documentation
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View source: R/convert_pvar_table_to_bim_table.R
| convert_pvar_table_to_bim_table | R Documentation |
Convert a PLINK2 .pvar table to a PLINK .bim table
Description
Convert a PLINK2 .pvar table to a PLINK .bim table
Usage
convert_pvar_table_to_bim_table(pvar_table, verbose = FALSE)
Arguments
pvar_table |
a tibble with as much rows as SNPs. It has the following columns:
The uppercase column names are those as used by PLINK2. |
verbose |
the verbosity of a function. Set to TRUE for more output. Use check_verbose to detect if this argument is valid. |
Value
a PLINK .bim table
Author(s)
Richèl J.C. Bilderbeek
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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