create_assoc_args: Create the command-line arguments to call PLINK or PLINK2

In richelbilderbeek/plinkr: Interface to PLINK

Create the command-line arguments to call PLINK or PLINK2

Description

Create the command-line arguments to call PLINK or PLINK2

Usage

create_assoc_args(
  assoc_data,
  assoc_params,
  plink_options = create_plink_options()
)

Arguments

assoc_data	data to use for an association analysis for a quantitative trait (i.e. using assoc), as can be created by create_assoc_data
assoc_params	parameters to do an association analysis for a quantitative trait (i.e. using assoc), as can be created by create_assoc_params
plink_options	options to run PLINK, as created by create_plink_options

Value

the command-line arguments

Author(s)

Richèl J.C. Bilderbeek

richelbilderbeek/plinkr documentation built on March 25, 2024, 3:18 p.m.