create_assoc_qt_covar_args: Create the command-line arguments to call 'PLINK' or 'PLINK2'...

In richelbilderbeek/plinkr: Interface to PLINK

Create the command-line arguments to call PLINK or PLINK2 to do a quantitative trait analysis with covariates

Description

Create the command-line arguments to call PLINK or PLINK2 to do a quantitative trait analysis with covariates

Usage

create_assoc_qt_covar_args(
  assoc_qt_covar_data,
  assoc_qt_covar_params,
  plink_options = create_plink_options()
)

Arguments

assoc_qt_covar_data	data to do an association analysis for a quantitative trait with covariates (i.e. using assoc_qt_covar), as can be created by create_assoc_qt_covar_data
assoc_qt_covar_params	parameters to do an association analysis for a quantitative trait with covariates (i.e. using assoc_qt_covar), as can be created by create_assoc_qt_covar_params
plink_options	options to run PLINK, as created by create_plink_options

Value

the command-line arguments

Author(s)

Richèl J.C. Bilderbeek

richelbilderbeek/plinkr documentation built on March 25, 2024, 3:18 p.m.