create_cov_table_from_data: Create a single-covariate table from pedigree ('.ped') table

In richelbilderbeek/plinkr: Interface to PLINK

Create a single-covariate table from pedigree (.ped) table

Description

Create a single-covariate table from pedigree (.ped) table. The individuals' family and within-family ID's are copied.

Usage

create_cov_table_from_data(data)

Arguments

data

the data source, which can be: PLINK text data, as created by create_plink_text_data. PLINK binary data, as created by create_plink_bin_data. PLINK2 binary data, as created by create_plink2_bin_data. PLINK text filenames, as created by create_plink_text_filenames. PLINK binary filenames, as created by create_plink_bin_filenames. PLINK2 binary filenames, as created by create_plink2_bin_filenames. data to be used by assoc, as created by create_assoc_data data to be used by assoc_qt, as created by create_assoc_qt_data

Value

a single-covariate tibble, with columns:

• FID the family ID

• IID the within-family ID

• C1 the covariate, which is zero by default

The column names match the PLINK names, see https://www.cog-genomics.org/plink/1.9/input#covno

Author(s)

Richèl J.C. Bilderbeek

Examples

create_cov_table_from_data(data = create_test_plink_text_data())

richelbilderbeek/plinkr documentation built on March 25, 2024, 3:18 p.m.