create_keep_args: Create the CLI arguments to call 'PLINK' with the '–keep'...

In richelbilderbeek/plinkr: Interface to PLINK

Create the CLI arguments to call PLINK with the --keep flag

Description

Create the CLI arguments to call PLINK with the --keep flag

Usage

create_keep_args(bfile, sample_ids_filename, base_output_filename)

Arguments

bfile	the base filename of the binary files (i.e. a .bed, .bim and .fam file). This parameter is named after the PLINK --bfile flag
sample_ids_filename	name of a file to store sample_ids (see check_sample_ids) to
base_output_filename	the base of the filenames that are used as output for PLINK/PLINK2

Value

the CLI arguments

Author(s)

Richèl J.C. Bilderbeek

richelbilderbeek/plinkr documentation built on March 25, 2024, 3:18 p.m.