create_select_chromosome_args: Create the command-line arguments to select a chromosome

In richelbilderbeek/plinkr: Interface to PLINK

Create the command-line arguments to select a chromosome

Description

Create the command-line arguments to select a chromosome

Usage

create_select_chromosome_args(
  plink_bin_filenames,
  chromosome_selector,
  base_output_filename,
  plink_options = create_plink_options()
)

Arguments

plink_bin_filenames	the binary data files' names for PLINK to work on, as created by create_plink_bin_filenames.
chromosome_selector	a SNP selector (see create_snps_selector) that allows one to select a single chromsome, as created by create_chromosome_selector and checked by check_chromosome_selector
base_output_filename	the base of the filenames that are used as output for PLINK/PLINK2
plink_options	options to run PLINK, as created by create_plink_options

Value

the command-line arguments

Author(s)

Richèl J.C. Bilderbeek

richelbilderbeek/plinkr documentation built on March 25, 2024, 3:18 p.m.