create_test_plink2_bin_filenames: Create a 'plink2_bin_filenames' to be used in testing.

In richelbilderbeek/plinkr: Interface to PLINK

Create a plink2_bin_filenames to be used in testing.

Description

Create a plink2_bin_filenames to be used in testing.

Usage

create_test_plink2_bin_filenames(
  pgen_filename = get_plinkr_filename("select_snps_plink2.pgen"),
  psam_filename = get_plinkr_filename("select_snps_plink2.psam"),
  pvar_filename = get_plinkr_filename("select_snps_plink2.pvar")
)

Arguments

pgen_filename	name of a PLINK2 .pgen file Use read_plink2_pgen_file to read a PLINK2 .pgen file
psam_filename	name of a PLINK2 .psam file Use read_plink2_psam_file to read a PLINK2 .psam file
pvar_filename	name of a PLINK2 .pvar file Use read_plink2_pvar_file to read a PLINK2 .pvar file

Value

a list with the following elements:

• pgen_filename: the .pgen filename

• psam_filename: the .psam filename

• pvar_filename: the .pvar filename

Author(s)

Richèl J.C. Bilderbeek

See Also

Use create_plink2_bin_filenames to creata a set of PLINK2 binary filenames to be used in testing.

plinkr has the following functions to create sets of filenames, depending on the data:

• PLINK text files: use create_plink_text_filenames

• PLINK binary files: use create_plink_bin_filenames

• PLINK2 binary files: use create_plink2_bin_filenames

Examples

create_test_plink2_bin_filenames()

richelbilderbeek/plinkr documentation built on March 25, 2024, 3:18 p.m.