read_plink_bed_file: Read a 'PLINK'/'PLINK2' '.bed' file

In richelbilderbeek/plinkr: Interface to PLINK

Read a PLINK/PLINK2 .bed file

Description

Read a PLINK/PLINK2 .bed file

Usage

read_plink_bed_file(bed_filename, names_loci, names_ind, verbose = FALSE)

Arguments

bed_filename	name of a PLINK .bed file Use read_plink_bed_file to read a PLINK .bed file.
names_loci	see read_bed
names_ind	see read_bed
verbose	the verbosity of a function. Set to TRUE for more output. Use check_verbose to detect if this argument is valid.

Author(s)

Richèl J.C. Bilderbeek

Examples

bim <- read_plink_bim_file(get_plinkr_filename("demo_assoc.bim"))
fam <- read_plink_fam_file(get_plinkr_filename("demo_assoc.fam"))
read_plink_bed_file(
  bed_filename = get_plinkr_filename("demo_assoc.bed"),
  names_loci = bim$id,
  names_ind = fam$id
)

richelbilderbeek/plinkr documentation built on March 25, 2024, 3:18 p.m.