read_plink_simfreq_file: Read a PLINK '.simfreq' file

In richelbilderbeek/plinkr: Interface to PLINK

Read a PLINK .simfreq file

Description

Read a PLINK .simfreq file

Usage

read_plink_simfreq_file(simfreq_filename)

Arguments

simfreq_filename

name of a PLINK .simfreq file

Value

a tibble with column names:

• n_snps Number of SNPs in set (always 1 in autogenerated file)

• label Label of this set of SNPs

• allele_frequency_lower_bound Reference allele frequency lower bound

• allele_frequency_upper_bound Reference allele frequency upper bound (equal to lower bound in autogenerated file)

• additive_genetic_variance Additive genetic variance for each SNP

• dominance_deviation Dominance deviation

Author(s)

Richèl J.C. Bilderbeek

See Also

File format reference at https://www.cog-genomics.org/plink/1.9/formats#simfreq

richelbilderbeek/plinkr documentation built on March 25, 2024, 3:18 p.m.