save_map_table: Save a '.map' table to file.

In richelbilderbeek/plinkr: Interface to PLINK

Save a .map table to file.

Description

Save a .map table to file

Usage

save_map_table(map_table, map_filename, plink_options = create_plink_options())

Arguments

map_table	a genetic mapping table. A map_table is a tibble with the following columns: CHR: the chromosome code or contig name. The chromosome number cannot exceed 95 (https://www.cog-genomics.org/plink/1.9/input#chr_set) SNP: Variant identifier position_cm: Position in morgans or centimorgans. This value is optional. Zeroes denote it is unused BP: Base-pair coordinat Use read_plink_map_file to read a PLINK .map file. Use check_map_table to test if a genetic mapping table is valid.
map_filename	name of a PLINK .map file Use read_plink_map_file to read a PLINK .map file.
plink_options	options to run PLINK, as created by create_plink_options

Author(s)

Richèl J.C. Bilderbeek

richelbilderbeek/plinkr documentation built on March 25, 2024, 3:18 p.m.