save_pgen_table: Save a '.pgen' table to file.

In richelbilderbeek/plinkr: Interface to PLINK

Save a .pgen table to file.

Description

Save a .pgen table to file

Usage

save_pgen_table(pgen_table, pgen_filename, verbose = FALSE)

Arguments

pgen_table	an array that maps the individuals to their SNPs, with as much rows as individuals, and as much SNPs as columns. Optionally, the row names are the individuals' IDs, where the column names are the SNP ID's
pgen_filename	name of a PLINK2 .pgen file Use read_plink2_pgen_file to read a PLINK2 .pgen file
verbose	the verbosity of a function. Set to TRUE for more output. Use check_verbose to detect if this argument is valid.

Author(s)

Richèl J.C. Bilderbeek

Examples

pgen_table <- get_test_pgen_table()
pgen_filename <- get_plinkr_tempfilename(fileext = ".pgen")
if (1 == 2) {
  save_pgen_table(
    pgen_table = pgen_table,
    pgen_filename = pgen_filename
  )
  file.remove(pgen_filename)
}

richelbilderbeek/plinkr documentation built on March 25, 2024, 3:18 p.m.