save_pvar_table: Save a '.pvar' table to file.

In richelbilderbeek/plinkr: Interface to PLINK

Save a .pvar table to file.

Description

Save a .pvar table to file

Usage

save_pvar_table(pvar_table, pvar_filename, verbose = FALSE)

Arguments

pvar_table	a tibble with as much rows as SNPs. It has the following columns: CHROM: the chromosome POS: the position on the chromosome ID: the SNP ID REF: the reference variant ALT: the alternate variant The uppercase column names are those as used by PLINK2.
pvar_filename	name of a PLINK2 .pvar file Use read_plink2_pvar_file to read a PLINK2 .pvar file
verbose	the verbosity of a function. Set to TRUE for more output. Use check_verbose to detect if this argument is valid.

Author(s)

Richèl J.C. Bilderbeek

Examples

pvar_table <- get_test_pvar_table()
pvar_filename <- get_plinkr_tempfilename(fileext = ".pvar")
save_pvar_table(
  pvar_table = pvar_table,
  pvar_filename = pvar_filename
)
file.remove(pvar_filename)

richelbilderbeek/plinkr documentation built on March 25, 2024, 3:18 p.m.