rmflight/categoryCompare
Meta-analysis of high-throughput experiments using feature annotations

Package index
Search the rmflight/categoryCompare package
Functions
235
Source code
11
Man pages
32
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rmflight/categoryCompare: Meta-analysis of high-throughput experiments using feature annotations
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API

API for rmflight/categoryCompare
Meta-analysis of high-throughput experiments using feature annotations

Global functions
.annGenesComp Source code
.annotateOutData Source code
.breakEdges Source code
.breakEdgesGraph Source code
.ccCompare Source code
.ccCompareGO Source code
.ccCompareGeneric Source code
.ccCompareKEGG Source code
.ccOutCyt Source code
.classGen Source code
.colorData Source code
.compData Source code
.compMem Source code
.cwReload Source code
.cytOutData Source code
.cytOutNodes Source code
.extractRes Source code
.getDesc Source code
.goEnrich Source code
.headerOutData Source code
.initGraphAtts Source code
.keggEnrich Source code
.makeValidccLists Source code
.makeValidccOptions Source code
.mergeLists Source code
.minNodes Source code
.moveTable Source code
.outType Source code
.replaceCompareNames Source code
.resetColors Source code
GENccEnrichResult Man page
GENccEnrichResult,ccCompareGeneric-method Man page
GENccEnrichResult-class Man page
GOHyperGParams Man page
GOHyperGParams-class Man page
GOHyperGParamsCC Man page
GOHyperGParamsCC-class Man page
GOHyperGResultCC Man page
GOHyperGResultCC-class Man page
GOccEnrichResult Man page
GOccEnrichResult-class Man page
HyperGParamsCC Man page
HyperGParamsCC-class Man page
HyperGResultCC Man page
HyperGResultCC-class Man page
KEGGHyperGParams Man page
KEGGHyperGParams-class Man page
KEGGHyperGParamsCC Man page
KEGGHyperGParamsCC-class Man page
KEGGHyperGResultCC Man page
KEGGHyperGResultCC-class Man page
KEGGccEnrichResult Man page
KEGGccEnrichResult-class Man page
[,GENccEnrichResult,ANY,ANY,ANY-method Man page
[,GENccEnrichResult,ANY,ANY-method Man page
[,ccEnrichResult,ANY,ANY,ANY-method Man page
[,ccEnrichResult,ANY,ANY-method Man page
addListMembership Source code
allAnnotation Man page
allAnnotation,ccCompareResult-method Man page
annStatus Source code
annotation,ccSigList-method Man page
breakEdges Man page
breakEdges,ccCompareResult,numeric-method Man page
breakEdges,numeric,numeric-method Man page
breakEdges-methods Man page
category,GENccEnrichResult-method Man page
category,ccSigList-method Man page
categoryCompare Man page
categoryCompare-package Man page
ccCompare Man page
ccCompare,GENccEnrichResult,ccOptions-method Man page
ccCompare,GOccEnrichResult,ccOptions-method Man page
ccCompare,KEGGccEnrichResult,ccOptions-method Man page
ccCompare,ccEnrichCollection,ccOptions-method Man page
ccCompare-methods Man page
ccCompareCollection Man page
ccCompareCollection-class Man page
ccCompareGeneric Man page
ccCompareGeneric,GENccEnrichResult,ccOptions-method Man page
ccCompareGeneric-methods Man page
ccCompareResult Man page
ccCompareResult-class Man page
ccData Man page
ccEnrich Man page
ccEnrich,ccGeneList-method Man page
ccEnrich-method Man page
ccEnrichCollection Man page
ccEnrichCollection-class Man page
ccEnrichResult Man page
ccEnrichResult-class Man page
ccGeneList Man page
ccGeneList-class Man page
ccOptions Man page
ccOptions,ccCompareGeneric-method Man page
ccOptions-class Man page
ccOpts Man page
ccOutCyt Man page
ccOutCyt,ccCompareResult,ccOptions-method Man page
ccOutCyt-methods Man page
ccResults Man page
ccResultsBPHier Man page
ccSigList Man page
ccSigList-class Man page
ccType Man page
ccType,ccGeneList-method Man page
ccType<- Man page
ccType<-,ccGeneList-method Man page
compareColors Man page
compareColors,ccOptions-method Man page
compareColors<- Man page
compareColors<-,ccOptions-method Man page
compareIndx Man page
compareIndx,ccOptions-method Man page
compareNames Man page
compareNames,ccOptions-method Man page
compareNames<- Man page
compareNames<-,ccOptions-method Man page
createGraph Source code
createGraph2 Source code
cssClass Man page
cssClass,ccOptions-method Man page
cwReload Man page
cwReload,numeric,ccOptions-method Man page
cwReload,numeric,character,ccOptions-method Man page
cwReload-methods Man page
cytOutData Man page
cytOutData,list,ccCompareResult,mergedData-method Man page
cytOutData,list,ccCompareResult,missing-method Man page
cytOutData,list,missing,missing-method Man page
cytOutData-methods Man page
cytOutNodes Man page
cytOutNodes,character,numeric,list-method Man page
cytOutNodes,character,numeric,missing-method Man page
cytOutNodes-methods Man page
enrichLists Man page
fdr Man page
fdr,HyperGParamsCC-method Man page
fdr,HyperGResultCC-method Man page
fdr,ccEnrichResult-method Man page
fdr,ccGeneList-method Man page
fdr<- Man page
fdr<-,HyperGParamsCC-method Man page
fdr<-,ccGeneList-method Man page
fdrvalues Man page
fdrvalues,HyperGResultCC-method Man page
fdrvalues-method Man page
gUniverse Man page
geneAnnMapping Man page
geneAnnMapping,GENccEnrichResult-method Man page
geneLists Man page
getAnnotation Man page Source code
getBar Source code
getEntrez Source code
getGO2ALLEGS Man page Source code
getGeneName Man page Source code
getGeneSymbol Man page Source code
getPATH2EG Man page Source code
graphType Man page
graphType,GENccEnrichResult-method Man page
graphType,ccEnrichCollection-method Man page
graphType,ccEnrichResult-method Man page
graphType-methods Man page
graphType<- Man page
graphType<-,GENccEnrichResult-method Man page
graphType<-,ccEnrichCollection-method Man page
graphType<-,ccEnrichResult-method Man page
gseaRes Man page
hyperGTestCC Man page
hyperGTestCC,HyperGParamsCC Man page
hyperGTestCC,HyperGParamsCC-method Man page
hyperGTestCat Source code
isPackageLoaded Source code
isResult Source code
listNames Man page
listNames,ccGeneList-method Man page
listNames,ccOptions-method Man page
listNames<-,ccOptions-method Man page
mainGraph Man page
mainGraph,ccCompareResult-method Man page
mainTable Man page
mainTable,ccCompareResult-method Man page
mergeLists Man page
mergeLists,ccGeneList,ccOptions-method Man page
mergeLists-methods Man page
mergedData-class Man page
minCount Man page
minCount,HyperGResultCC-method Man page
minCount,ccEnrichResult-method Man page
minCount<- Man page
minCount<-,HyperGResultCC-method Man page
minCount<-,ccEnrichCollection-method Man page
minCount<-,ccEnrichResult-method Man page
minNodes Man page
minNodes,CytoscapeWindowClass,numeric-method Man page
nodeDat2Table Source code
ontology,GENccEnrichResult-method Man page
ontology,ccSigList-method Man page
outType Man page
outType,ccOptions-method Man page
outType<- Man page
outType<-,ccOptions-method Man page
pCC,HyperGResultCC-method Man page
pvalueCutoff,ccEnrichResult-method Man page
pvalueCutoff,ccGeneList-method Man page
pvalueCutoff<-,HyperGResultCC-method Man page
pvalueCutoff<-,ccEnrichCollection-method Man page
pvalueCutoff<-,ccEnrichResult-method Man page
pvalueCutoff<-,ccGeneList-method Man page
pvalueType Man page
pvalueType,HyperGResultCC-method Man page
pvalueType,ccEnrichResult-method Man page
pvalueType<- Man page
pvalueType<-,HyperGResultCC-method Man page
pvalueType<-,ccEnrichCollection-method Man page
pvalueType<-,ccEnrichResult-method Man page
resetColors Man page
resetColors,numeric,ccOptions-method Man page
resetColors-methods Man page
show,HyperGResultCC-method Man page
show-methods Man page
sigID Man page
sigID,ccSigList-method Man page
summary,HyperGResultCC-method Man page
summary-methods Man page
table10 Man page
table48 Man page
testDirection,ccGeneList-method Man page
visStatus Source code
whichCat Source code
rmflight/categoryCompare documentation built on April 25, 2024, 11:20 a.m.

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