getCurrentSpecies: Get Current Species

In robertdouglasmorrison/DuffyTools: Duffy Lab Utility Tools

Get Current Species

Description

Get details about the current species

Usage

getAllSpecies()
getAllSpeciesFilePrefixes()
getCurrentSpecies()
getCurrentSpeciesFilePrefix()
getSpeciesText( speciesID)

Details

These functions retrieve details about the currently active species. Keep in mind that a target can have more than one species, but only a single species is actually current at one time. See Species for a more detailed overview. See MapSets for details on species annotations in general.

Value

For 'getAllSpecies', a character vector of SpeciesIDs. For 'getAllSpeciesFilePrefixes', a named character vector of file prefixes, where the names are the corresponding SpeciesIDs. For 'getCurrentSpecies', a single SpeciesID for the currently active species. For 'getCurrentSpeciesFilePrefix', a single character string of this species's file prefix. For 'getSpeciesText', a text string description of that species annotation details.

See Also

setCurrentSpecies to change the current species. getAllTargets to see the full list of all targets and species currently defined.

robertdouglasmorrison/DuffyTools documentation built on April 16, 2024, 6:31 a.m.