localityPlot: Plot Gene Locations on Chromosomes

In robertdouglasmorrison/DuffyTools: Duffy Lab Utility Tools

Plot Gene Locations on Chromosomes

Description

Shows the geographic layout of gene subsets on the chromosomes of a genome

Usage

localityPlot(geneSet, mode = c("separate", "combined"), color = 2, label = "")

Arguments

geneSet	character vector of GeneIDs, or a named list of such vectors
mode	draw N separate chromosomes or one 'combined' superimposed meta-chromosome
color	colors for each set of genes in geneSet
label	optional text for plot main title

Details

This plot shows the visual locality of any gene subsets on the genome. Currently, it only supports one species at a time.

Value

None. Draws a plot.

See Also

setCurrentSpecies, to change the current species.

robertdouglasmorrison/DuffyTools documentation built on April 16, 2024, 6:31 a.m.