localityPlot: Plot Gene Locations on Chromosomes

Description Usage Arguments Details Value See Also

Description

Shows the geographic layout of gene subsets on the chromosomes of a genome

Usage

1
localityPlot(geneSet, mode = c("separate", "combined"), color = 2, label = "")

Arguments

geneSet

character vector of GeneIDs, or a named list of such vectors

mode

draw N separate chromosomes or one 'combined' superimposed meta-chromosome

color

colors for each set of genes in geneSet

label

optional text for plot main title

Details

This plot shows the visual locality of any gene subsets on the genome. Currently, it only supports one species at a time.

Value

None. Draws a plot.

See Also

setCurrentSpecies, to change the current species.


robertdouglasmorrison/DuffyTools documentation built on Dec. 14, 2018, 3:05 p.m.