phredScoreStringToInt: Convert Phred Quality Score Strings to Integers
In robertdouglasmorrison/DuffyTools: Duffy Lab Utility Tools
phredScoreStringToInt R Documentation
Convert Phred Quality Score Strings to Integers
Description
Turn the cryptic Phred quality scores from FASTQ files, etc., into integers
Usage
phredScoreStringToInt(txt, scoreType = "Phred33")
Arguments
txt
character vector of Phred quality score strings
scoreType
type of offset used for the ASCII coded scores. Currently, only
'Phred33' and 'Phred66' are supported.
Details
Most efficient for strings of equal length.
Value
an integer matrix with NR rows and NC columns, where NR = length(txt)
and NC = max(nchar(txt)). Each element is the Phred score of one
DNA base call.
Examples
phredScoreStringToInt( c( "_ABBBB&&.#$&", "IIIIIIIIIIII"))
robertdouglasmorrison/DuffyTools documentation built on April 16, 2024, 6:31 a.m.
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| phredScoreStringToInt | R Documentation |
Convert Phred Quality Score Strings to Integers
Description
Turn the cryptic Phred quality scores from FASTQ files, etc., into integers
Usage
phredScoreStringToInt(txt, scoreType = "Phred33")
Arguments
txt |
character vector of Phred quality score strings |
scoreType |
type of offset used for the ASCII coded scores. Currently, only 'Phred33' and 'Phred66' are supported. |
Details
Most efficient for strings of equal length.
Value
an integer matrix with NR rows and NC columns, where NR = length(txt)
and NC = max(nchar(txt)). Each element is the Phred score of one
DNA base call.
Examples
phredScoreStringToInt( c( "_ABBBB&&.#$&", "IIIIIIIIIIII"))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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