readALNfile: Read Clustalw2 .ALN and .NXS files

Description Usage Arguments Details Value

View source: R/readALNfile.R

Description

Helper functions to read output files from Clustalw2, for multiple alignments

Usage

1
2

Arguments

file

full pathname to existing Clustalw2 output file

Details

Captures the multiple alignment text as a matrix of single characters.

Value

a character matrix, with a single letter for each element. The rownames are the names of the sequences submitted to Clustal.


robertdouglasmorrison/DuffyTools documentation built on Dec. 7, 2018, 8:02 a.m.